Faculty Publications

•  Bal, Schneider, and Richter. 2020. Decay of birdseye sugar maple ( Acer saccharum ) and curly red maple ( Acer rubrum ) figured woods.  Wood and Fiber Science , 52(3): 292-297  https://doi.org/10.22382/wfs-2020-027
• Bal, T, Sharik T. 2019. Web content analysis of University forestry and related natural resources landing webpages in the United States in relation to student and faculty diversity.  Journal of Forestry doi:10.1093/jofore/fvz024. Read More
• Bal, T, Sharik T. 2019. Image content analysis of US natural resources-related professional society websites with respect to gender and racial/ethnic diversity.  Journal of Forestry doi:10.1093/jofore.fvs023.  Read More
• Bal, T, Raj, J, Richter, D. 2019. Influence of Chaga ( Inonotus obliquus) treatment of wood in decay tests. Current Research in Environmental & Applied Mycology 9(1): 85-91. Read More
• Cladas, K, Bal, T, Storer, A. 2018. Is success in detection of Agrilus planipennis related to forest edges?  Journal of Applied Entomology 143: 214-224   Read More
• Bal, TL, Storer, AJ, Jurgensen, MF. 2018. Evidence of damage from exotic invasive earthworm activity was highly correlated to sugar maple dieback in the Upper Great Lakes region. Biological Invasions 20 (1): 151-164. Read More
• Bal, TL, Storer, AJ, Jurgensen, MF, Doskey, PV, Amacher, MC, 2015. Nutrient stress predisposes and contributes to sugar maple dieback across its northern range: a review. Forestry 88 (1): 64-83. Read More
• Bal, T.L., 2014. Forest Health Detectives. The American Biology Teacher. 76 (8): 532-537 Read More
• Bal, T.L., Richter, D.L,. Storer, A.J., and Jurgensen, M.F. 2013. The relationship of the Sapstreak Fungus, Ceratocystis virescens, to Sugar Maple Dieback and Decay in North Michigan. American Journal of Plant Science 4(2A): 436-443. Read More
• Evaluation of Sugar Maple Dieback in the Upper Great Lakes Region and Development of a Forest Health Youth Education Program. PhD Dissertation. Michigan Technological University. 2013. Read More

• Heppenheimer,E., K. Brzeski, J. Hinton, M. Chamberlain, J. Robinson, R. Wayne, B. vonHoldt. 2020 . A Genome-wide perspective on the persistence of red wolf ancestry in southeastern canids. Journal of Heredity. 111(3), 277-286.
• DeCandia, A. K. Brzeski, E. Heppenheimer, C. Carol, G. Camenisch, P. Wandeler, C. Driscoll, B. vonHoldt. 2019. Urban colonization through multiple genetic lenses: The city-fox phenomenon revisited. Ecology and Evolution. 9(4), 2046-2060.
• Heppenheimer E. ^*, K. Brzeski*, R. Wooten, W. Waddell, Rutledge, M. Chamberlain, D. Stahler, J. Hinton, B. vonHoldt. 2018. Rediscovery of red wolf ghost alleles in a canid population along the American Gulf Coast. Genes. 9(12):618. *co-lead & corresponding author.
• Heppenheimer,E., K. Brzeski, J. Hinton, B. Patterson, L. Rutledge, A. DeCandia, T. Wheeldon, S. Fain, P. Hohenlohe, R. Kays, B. White, B. vonHoldt. 2018. High genomic diversity and candidate genes under selection associated with range expansion in eastern coyote ( Canis latrans) populations. Ecology and Evolution. 8(24):12641-12655.
• vonHoldt, B., K. Brzeski, D. Wilcove, L. Rutledge. 2018. Redefining the impact of admixture and genomics in endangered species conservation. Conservation Letters. 11(2): e12371.
• Brzeski, K., M. DeBiasse, D. Rabon, M. Chamberlain, S. Taylor. 2016.Mitochondrial DNA variation in Eastern pre-Columbian canids. Journal of Heredity, 107:287-293.
• Brzeski, K., B. Bartel, W. Waddell, K. Wolf, D. Rabon, S. Taylor. 2015.Infectious disease and red wolf conservation: assessment of disease occurrence and associated risks. Journal of Mammalogy, 96:751-761.
• Brzeski, K., D. Rabon, M. Chamberlain, L. Waits, S. Taylor. 2014. Inbreeding and inbreeding depression in endangered red wolves ( Canis rufus). Molecular Ecology, 23:4241–4255.

• Crowther, T.W., C.W. Rowe, W.R. Wieder, J.C. Carey, M.B. Machmuller, K.E.O. Todd-Brown, L.B. Snoek, S. Fang, G. Zhou, S.D. Allison, J.M. Blair, S.D. Bridgham, A.J. Burton, et al. 2016. Quantifying global soil C losses in response to warming. Nature 540:104-108. Read More
• Carey, J.C., J. Tang, P.H. Templer, K.D. Kroeger, T.W. Crowther, A.J. Burton, J.S. Dukes, B. Emmett, S. Frey, et al. 2016. Temperature response of soil respiration largely unaltered with experimental warming. Proceedings National Academy of Sciences 113:13797-13802. Read More
• Ebanyenle, E., A.J. Burton, A.J. Storer, D.L. Richter, J.A. Glaeser. 2016. Elevated tropospheric CO2 and O3 may not alter initial wood decomposition rate or wood-decaying fungal community composition of northern hardwoods. International Biodeterioration and Biodegradation 111:74-77. Read More
• Ibanez, I., D. Zak, A.J. Burton, K. Pregtizer. 2016. Chronic nitrogen deposition alters allometric relationships in a dominant tree species: Implications for woody biomass production and ecosystem carbon storage. Ecological Applications 26:913-925. Read More
• Gahagan, A., C.P. Giardina, J.S. King, D. Binkley, K.S. Pregitzer, and A.J. Burton. 2015. Carbon fluxes, storage and harvest removals through 60 years of stand development in red pine plantations and mixed hardwood stands in Northern Michigan, USA. Forest Ecology and Management 337:88-97. Read More
• Frey, S.D., S. Ollinger, K. Nadelhoffer, R. Bowden, E. Brzostek, A. Burton, B.A. Caldwell, S. Crow, C.L. Goodale, A.S. Grandy, A. Finzi, M.G. Kramer, K. Lajtha, J. LeMoine, M. Martin, W.H. McDowell, R. Minocha, J.J. Sadowsky, P.H. Templer, and K. Wickings. 2014. Chronic nitrogen additions suppress decomposition and sequester soil carbon in temperate forests. Biogeochemistry 121:305-316. Read More
• Kaarakka, L., P. Tamminen, A. Saarsalmi, M. Kukkola, H.S. Helmisaari, and A.J. Burton. 2014. Effects of repeated whole-tree harvesting on soil properties and tree growth in a Norway spruce (Picea abies (L.) Karst.) stand. Forest Ecology and Management 313:180-187. Read More
• Talhelm, A.F., K.S. Pregitzer, M.E. Kubiske, D.R. Zak, C.E. Campany, A.J. Burton, R.E. Dickson, G.R. Hendrey, J.G. Isebrands, K.F. Lewin, J. Nagy, and D.F. Karnosky. 2014. Elevated carbon dioxide and ozone alter productivity and carbon storage in northern temperate forests. Global Change Biology 20:2492-2504. Read More
• Jarvi, M.P., and A.J. Burton. 2013. Acclimation and soil moisture constrain sugar maple root respiration in experimentally warmed soil. Tree Physiology 33:949-959. Read More
• Burton, A.J., J.C. Jarvey, M.P, Jarvi, D.R. Zak, and K.S. Pregitzer. 2012. Chronic N deposition alters root respiration-tissue N relationship in northern hardwood forests. Global Change Biology 18:258-266. Read More

• Yordanov YS, Ma C, Strauss SH, Busov VB (2014) Early Bud-Break 1 (EBB1) is a regulator of release from seasonal dormancy in poplar trees. Proc Natl Acad Sci U S A 111: 10001-10006 Read More
• Zawaski, Christine and Victor B. Busov. (2014) Roles of gibberellin catabolism and signaling in growth and physiological response to drought and short-day photoperiods in Populus trees. PLOS ONE, 9 (1), e86217 Read More
• Wei, Hairong, Yordan Yordanov, Tatyana Georgieva, Xiang Li, and Victor Busov (2013) Nitrogen deprivation promotes Populus root growth through global transcriptome reprogramming and activation of hierarchical genetic networks. New Phytol 200:483-497 Read More
• Elias, Ani A., Victor B. Busov, Kevin R. Kosola, Cathleen Ma, Elizabeth Etherington, Olga Shevchenko, Harish Gandhi, David W. Pearce, Stewart B. Rood, and Steven H. Strauss. (2012) Green revolution trees: Semi-dwarfism transgenes modify gibberellins, promote root growth, enhance morphological diversity, and reduce competitiveness in Populus. Plant Physiol 160: 1130-1144 Read More
• Yordanov Yordan, Sharon Regan and Victor Busov (2010) Members of the Lateral Organ Boundaries Domain (LBD) Transcription Factors Family are Involved in Regulation of Secondary Growth in Populus. The Plant Cell. 22: 3662-3677 Read More
• Gou, J., Strauss, S.H., Tsai, C.J., Fang, K., Chen, Y., Jiang, X., and Busov, V.B. (2010) Gibberellins Regulate Lateral Root Formation in Populus through Interactions with Auxin and Other Hormones. Plant Cell 22:623-639. Read More
• Busov VB, Brunner AM, Strauss SH. 2008. Genes for control of plant stature and form. New Phytologist 177: 589-607. 

• Kennard D, Matlaga D, Joanne S, Clay K, Alonso-Rodriguez Aura, Reed SC, Cavaleri MA, and Wood TE. In press. Tropical understory herbaceous community responds more strongly to hurricane disturbance than to experimental warming. Ecology and Evolution.
• Reed SC, Reibold R, Cavaleri MA, Alonso-Rodríguez AM, Berberich ME, Wood TE. (2020). Soil biogeochemical responses of a tropical forest to warming and hurricane disturbance. Advances in Ecological Research. https://doi.org/10.1016/bs.aecr.2020.01.007
• Kramer R*, Ishii, HR, Carter KR, Miyazaki Y, Cavaleri MA, Araki M, Azuma W, Inoue Y, and Hara C. (2020). Predicting effects of climate change on productivity and persistence of forest trees. Ecological Reviews. https://doi.org/10.1111/1440-1703.12127
• Benedicte B, Alonso-Rodríguez AM, Aldrich-Wolfe L, Cavaleri MA, Reed SC, Wood TE. (2020). Altered climate leads to positive density-dependent feedbacks in a tropical rainforest. Global Change Biology. https://doi.org/10.1111/gcb.15087
• Kumarathunge DP*, Medlyn BE, Drake JE, Tjoelker MG, Aspinwall MJ, Battaglia M, Cano FJ, Carter KR*, Cavaleri MA, Cernusak LA, Chambers JQ, Crous KY, De Kauwe MG, Dillaway DN, Dreyer E, Ellsworth DS, Ghannoum O, Han Q, Hikosaka K, Jensen AM, Kelly JWG, Kruger EL, Mercado LM, Onoda Y, Reich PB, Rogers A, Slot M, Smith N, Tarvainen L, Tissue DT, Togashi HF, Tribuzy ES, Uddling J, Vårhammar A, Wallin G, Warren JM and Way DA (2019) Acclimation and adaptation components of the temperature dependence of plant photosynthesis at the global scale. New Phytologist, 222: 768-784. https://doi.org/10.1111/nph.15668
• Wood TE, González G, Silver WL, Reed SC, and Cavaleri MA (2019) On the Shoulders of Giants: Continuing the Legacy of Large-Scale Ecosystem Manipulation Experiments in Puerto Rico. Forests, 10: 210. https://doi.org/10.3390/f10030210
• Wood TE, Cavaleri MA, Giardina G, Khan S, Mohan JE, Nottingham A, Reed SC and Slot M. (2019) Soil warming effects on low-latitude forests with highly-weathered soils. In JE Mohan (Ed.), Ecosystem Consequences of Soil Warming: Microbes, Vegetation, Fauna, and Soil Biogeochemistry (pp. 385-439). London, UK: Academic Press, Elsevier. https://doi.org/10.1016/B978-0-12-813493-1.00015-6

• Hupperts, S. F.*, Webster, C. R., Froese, R. E., Lilleskov, E., Marcarelli, A. and Dickinson, Y.L. (2020) Increasing ground-layer plant taxonomic diversity masks declining phylogenetic diversity along a silvicultural disturbance gradient. Canadian Journal of Forest Research.
• Hupperts, S. F.*, Webster, C. R., Froese, R. E., and Dickinson, Y.L. (2020). Seedling and sapling recruitment following novel silvicultural treatments in Great Lakes northern hardwoods.  Forest Ecology and Management 462: 117983.
• Vickers, L.A., McWilliams, W.H., Knapp, B.O., D’Amato, A.W., Dey, D.C., Dickinson, Y.L., Kabrick, J.M., Kenefic, L.S., Royo, A.A., Saunders, M.R., Shifley, S.R. and Westfall, M.R., (2019) Are current seedling demographics poised to regenerate northern US forests? Journal of Forestry fvz046: 1–21
• Dickinson, Y.L., Battaglia, M.A. and Asherin, L. (2019) Evaluation of the GENGYM diameter growth model and potential modifications in structurally-complex ponderosa pine ( Pinus ponderosa Douglas ex C. Lawson) forests. Journal of Forest Ecology 448: 1–10
• Dickinson, Y.L., Wang, X., Wiedenbeck, J. and Ross, R.J. (2019) Effects of silvicultural practices on engineering properties of northern hardwood species of the Great Lakes region — A Literature Review. General Technical Report FPL-GTR-269. Madison, WI: U.S. Department of Agriculture, Forest Service, Forest Products Laboratory. 17p.
• Addington, R.N., Aplet, G.H., Battaglia, M.A., Briggs, J.S., Brown, P.M., Cheng, T.S., Dickinson, Y., Feinstein, J.A., Fornwalt, P.J., Gannon, B., Julian, C., Pelz, K.A., Regan, C.M., Thinnes, J., Truex, R., Underhill, J. and Wolk, B. (2018) Principles and practices for the restoration of ponderosa pine and dry mixed-conifer forests of the Colorado Front Range .Gen. Tech. Rep. RMRS-GTR-372. Ft Collins, CO. US Department of Agriculture, Forest Service, Rocky Mountain Research Station. 121p.
• Fahey, R.T., Alveshere, B., Burton, J.I., D’Amato, A., Dickinson, Y.L., Keeton, W.S., Kern, C.C., Larson, A.J., Palik, B.J., Puettmann, K.J., Saunders, M.R., Webster, C.R., Atkins, J.W., Gough. C.M., Hardiman, B.S. (2018) Shifting conceptions of complexity in forest management and silviculture. Forest Ecology and Management. 421:59–71

• Haskell, D. D.J. Flaspohler, C. Webster, and M. Meyer. 2010 (accepted, in press). Variation in soil temperature, moisture, and plant growth with the addition of down woody material on lakeshore restoration sites. Restoration Ecology.
• Webster, C.R., D.J. Flaspohler, R.D. Jackson, T. Meehan, C. Gratton. 2010 (accepted, in press). Diversity, productivity and landscape-level effects of grasslands managed for biomass production. Biofuels.
• Ford, M. and D. Flaspohler. 2010 (accepted, in press). Scale-dependent response by breeding songbirds to residential development along Lake Superior. Wilson Bulletin of Ornithology.
• Flaspohler, D., C. Giardina, G. Asner, P. Hart, J. Price, C. Ka’apu, and X. Castaneda. 2010. Long-term effects of fragmentation and fragment properties on bird species richness in Hawaiian forests. Biological Conservation 143:280-288.
• Fargione, J.E., T.R. Cooper, D.J. Flaspohler, J. Hill, C.L. Lehman, T. McCoy, S. McLeod, E. J. Nelson, K. S. Oberhauser, and D. Tilman. 2009. Bioenergy and wildlife: Threats and opportunities for grassland conservation. BioScience 59(9):767-778.
• Holmes, S., C. Webster, D. Flaspohler and R. Froese. 2009. Death and Taxus: the cost of high palatability in an era of population decline. Canadian Journal of Forest Research 39:1366-1374.
• Corace, R.G., III, D.J. Flaspohler, L.M. Shartell. 2009. Geographic patterns in openland cover and hayfield mowing in the Upper Great Lakes region: implications for grassland bird conservation. Landscape Ecology 24:309-324. 

• Banskota, A., N. Kayastha, M.J. Falkowski, M.A. Wulder, R.E. Froese and J.C. White. 2015. Forest monitoring using Landsat time-series data – A review. Canadian Journal of Remote Sensing 40:362-384. Read More
• Vance, E.D., W.M. Aust, R.E. Froese, R.B. Harrison, L.A. Morris and B.D. Strahm. 2014. Biomass harvesting and soil productivity: is the science meeting our policy needs? Soil Science Society of America Journal 78:S95-S104.
• Pond, N.C., R.E. Froese, R.K. Deo and M.J. Falkowksi. 2014. Multiscale validation of an operational model of forest inventory attributes developed with constrained remote sensing data. Canadian Journal of Remote Sensing 40:51-67. Read More
• Pond, N.C., R.E. Froese and L.M. Nagel. 2014. Sustainability of the selection system in northern hardwood forests. Forest Science 60(2):374:381. Read More
• Pond, N.C. and R.E. Froese. 2014. Evaluating published approaches for modelling diameter at breast height from stump dimensions. Forestry 87(5):683-696. Read More
• Brosofske, K.D., R.E. Froese, M.J. Falkowski and A. Banskota. 2014. A review of methods for mapping and prediction of inventory attributes for operational forest management. Forest Science 60(4):733-756. Read More
• Witt, J.C., C.R. Webster, R.E. Froese, T.D. Drummer and J.A. Vucetich. 2012. Scale-dependent drivers of ungulate patch use along a temporal and spatial gradient of snow depth. Canadian Journal of Zoology. 90: 972-83. Read More
• Barnes, D., R.E. Froese, R.G. Mannes and B. Warner. 2011. Combined sustainable biomass feedstock combustion, CO2/EOR, and saline reservoir geological carbon sequestration in Northern Lower Michigan, USA: towards negative CO2 emissions. Energy Procedia 4:2955-2962. Read More
• Froese, R.E., D.R. Shonnard, C.A. Miller, K.P. Koers and D.M. Johnson. 2010. Greenhouse gas emissions from coal-fired power plants in the US Great Lakes States. Biomass & Bioenergy 34(3): 251-262. Read More
• Pokharel, B and R.E. Froese. 2009. Representing site productivity in the basal area increment model for FVS-Ontario. Forest Ecology and Management 258: 657-666.
• Holmes, S.A., Webster, C.R., Flaspohler, D.J., and R.E. Froese. 2009. Death and Taxus: the cost of high palatability in an era of population decline. Canadian Journal of Forest Research 39: 1366-1374.
• Johnson, D.M, R.E. Froese, J. Waterstraut, A. Martin-Garcia J.H. Whitmarsh and C.A. Miller. 2009. Business viability of biomass co-firing and gasification for electricity generation. International Journal of Environmental Engineering 1: 405-431.
• Webster, C.R., J.H. Rock, R.E. Froese and M.A. Jenkins. 2008. Drought-herbivory interaction disrupts competitive displacement of native plants by Microstegium vimineum, 10 year results. Oecologia 157: 497-508.
• Pokharel, B. and R.E. Froese. 2008. Evaluating alternative implementations of the Lake States FVS diameter increment model. Forest Ecology and Management 255(5-6): 1759-1771.
• Froese, R.E. and A.P. Robinson. 2007. A validation and evaluation of the Prognosis individual-tree basal area increment model. Canadian Journal of Forest Research 37: 1438-1449.
• Robinson, A.P. and R.E. Froese. 2004. Model validation using equivalence tests. Ecological Modelling 176: 349-358. 

• Halvorsen, K.E., C. Schelly, R. Handler, E.C. Pischke, and J.L. Knowlton (eds). 2019.  A Research Agenda for Environmental Management. Edward Elgar Publishing: Cheltenham, UK.
• Halvorsen, K.E., Jessie L. Knowlton, Robert M. Handler, Chelsea Schelly and Erin C. Pischke. ‘Integrating across sectors and disciplines: transdisciplinary teamwork challenges and strategies.’ 2019. In  K.E. Halvorsen, C. Schelly, R. Handler, E.C. Pischke, and J.L. Knowlton (eds). A Research Agenda for Environmental Management. Edward Elgar Publishing: Cheltenham, UK.
• Dunn, J.L, Jessie L. Knowlton, Robert M. Handler, Erin C. Pischke, K. E. Halvorsen, M. Azahara Mesa-Jurado, Theresa L. Selfa, David J. Flaspohler, Julian Licata, Ena E. Mata-Zayas, Rodrigo Medeiros, Cassandra Moseley, Erik A. Nielsen, Valentin D Picasso Risso, Julio C. Sacramento-Rivero, Tatiana de Souza, Cesar J. Vazquez Navarrete and Nathan Basiliko. 2019. ‘Lessons from the transdisciplinary, international BIOPIRE project.’ In  K.E. Halvorsen, C. Schelly, R. Handler, E.C. Pischke, and J.L. Knowlton (eds). A Research Agenda for Environmental Management. Edward Elgar Publishing: Cheltenham, UK.
• Pischke, E.C., M. A. Mesa-Jurado, A. Eastmond, J. Abrams, K. E. Halvorsen. Community Perceptions of Climate Change and Adaptation Strategies in Tabasco, Mexico. 2018.  Journal of Environmental Studies and Sciences 8(4)441-451. DOI: 10.1007/s13412-018-0493-6.
• Kozich, A.T., K.E. Halvorsen, and A.S. Mayer. 2018. Perspectives on Water Resources among Anishinaabe and Non-Native Residents of the Great Lakes Region.  Journal of Contemporary Water Research and Education 163(April)94-108.

• Auer, M.T., Auer, N.A., Barkdoll, B.B., Bornhorst, T.J., Brooks, C., Dempsey, D., Doskey, P.V., Green, S.A., Hyslop, M.D., Kerfoot, W.K., Mayer, A.S., Perlinger, J.A., Shuchman, R., Urban, N.R. and Watkins, Jr., D.W. 2012. The Great Lakes: Foundations of Physics, Hydrology, Water Chemistry, and Biodiversity. In, J. Schnoor (ed.), Water Quality and Sustainability, Elsevier Publishers, London.
• Auer, M.T., Auer, N.A., Barkdoll, B.B., Bornhorst, T.J., Brooks, C., Dempsey, D., Doskey, P.V., Green, S.A., Hyslop, M.D., Kerfoot, W.K., Mayer, A.S., Perlinger, J.A., Shuchman, R., Urban, N.R. and Watkins, Jr., D.W. 2012. The Great Lakes: Nutrients, Sediments, Persistent Pollutants, and Policy Perspectives for a Sustainable Future. In, J. Schnoor (ed.), Water Quality and Sustainability, Elsevier Publishers, London.
• Hyslop, M.D., A.J. Storer, S. Brodeur-Campbell and J. Metzger. 2009. Michigan Ash Monitoring Plot System Upper Peninsula Plot Atlas. School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI.
• Storer, A.J., M.D. Hyslop, N.D. Windmuller, J.C. Witter, J. Stoyenoff. 2009. Southeastern Michigan Recreation Site Ash Survey Maps. School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI.
• Hyslop, M.D., A.J. Storer and J. Oisten. 2009. Upper Peninsula Recreation Site Ash Survey Maps. School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI.
• Storer A.J., M.F. Jurgensen, A.C. Risch, J. Delisle and M.D. Hyslop. 2008. The fate of an intentional introduction of Formica lugubris to North America from Europe. Journal of Applied Entomology 2008 132:4 276.
• Risch, A.C., M.F. Jurgensen, A.J. Storer, M.D. Hyslop and M. Schutz. 2008. Abundance and distribution of organic mound-building ants of the Formica rufa-group in Yellowstone National Park. Journal of Applied Entomology 2008 132:4 326.
• Froese, R.E., M.D. Hyslop, C.A. Miller, B. Garmon, H. McDiarmid, Jr., A. Shaw, L. Leefers, M. Lorenzo, S. Brown and M. Shy. 2007. Large-tract Forestland Ownership Change: Land Use, Conservation, and Prosperity in Michigan's Upper Peninsula. National Wildlife Federation, Ann Arbor, MI. 

• Shashank K. Pandey, Nookaraju Akula, Takeshi Fujino, Sivakumar Pattathil, and Chandrashekhar P. Joshi* (2016) Virus Induced Gene Silencing (VIGS) Mediated Functional Characterization of Two Genes Involved in Lignocellulosic Secondary Cell Wall Formation. Plant Cell Reports, 35:2353-2367.
• Puranik Swati, Kavitha S. Kumar, Oliver Gailing and Chandrashekhar P. Joshi* (2014) Modifying plant cell walls for bioenergy production. CAB Reviews 9, 017, pp 1-10.
• Nookaraju Akula, Shashank K. Pandey, Takeshi Fujino, Ju Young Kim, Mi Chung Suh, and Chandrashekhar P. Joshi* (2014) Enhanced Accumulation of Fatty Acids and Triacylglycerols in Transgenic Tobacco Stems for Enhanced Bioenergy Production. Plant Cell Reports 33 (7) 1041-1052.
• Sera Jung, Dae-Seok Lee, Yeon-Ok Kim, Chandrashekhar P. Joshi, and Hyeun-Jong Bae (2013) Improved recombinant cellulase expression in chloroplast of tobacco through promoter engineering and 5′ amplification promoting sequence. Plant Molecular Biology 83: 317–328. Published online in June 2013. DOI 10.1007/s11103-013-0088-2.
• Nookaraju A, Pandey SP, Bae HJ and Joshi CP* (2013) Designing cell walls for better bioenergy production. Molecular Plant 6 (1):8-10. doi: 10.1093/mp/sss111 First published online: October 5, 2012.
• Liu Y, Xu F, Gou J, Al-Haddad J, Telewski FW, Bae HJ and C. P. Joshi* (2012) Importance of Two Consecutive Methionines at the N-terminus of a Cellulose Synthase (PtdCesA8) for Normal Wood Cellulose Synthesis in Transgenic Aspen. Tree Physiology 32(11): 1403-1412 first published online October 17, 2012
• Chandrashekhar P. Joshi*, Shivegowda Thammannagowda, Takeshi Fujino, Jiqing Gou, Utku Avci, Candace H. Haigler, Lisa M. McDonnell, Shawn D. Mansfield, Bemnet Menghesa, Nicholas C. Carpita, Darby Harris, Seth DeBolt and Gary F. Peter (2011) Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen. Molecular Plant 4(2) 331-345.
• Zhu X, Pattahil S, Mazumdar K, Brehm A, Hahn MG. Dinesh-Kumar SP and C. P. Joshi* (2010) Virus-induced gene silencing offers a functional genomics platform for studying plant cell wall formation. Molecular Plant 3 (5): 818-833.
• Fuyu Xu and Chandrashekhar P. Joshi* (2010) Overexpression of Aspen Sucrose Synthase Gene Promotes Growth and Development of Transgenic Arabidopsis Plants. Advances in Biosciences and Biotechnology 1: 426-438.
• Manoj Kumar, Shivegowda Thammannagowda, Vincent Bulone, Vincent Chiang, Kyung-Hwan Han, Chandrashekhar P. Joshi, Shawn D. Mansfield, Ewa Mellerowicz, Björn Sundberg, Tuula Teeri, and Brian E. Ellis. An update on the nomenclature for the cellulose synthases genes from Populus. Trends in Plant Science 14(5):248-254, 2009.
• Shanfa Lu, Laigeng Li, Xiaoping Yi, Chandrashekhar P. Joshi, and Vincent L. Chiang: Differential expression of three eucalyptus secondary cell wall- related cellulose synthase genes in response to tension stress. Journal of Experimental Botany 59: 681-695, 2008.
• (Invited presentation) C.P. Joshi: Genetic engineering of poplars for biofuel production via altered synthesis of cellulose. Presented at Tree Biotechnology meeting at Whistler, BC, Canada during June 28-July 2, 2009.
• C. P. Joshi, Brunner A, Busov V, Meilan R, Thammanagowda S, Tsai C.: Poplars. In: Compendium of transgenic crop plants: Transgenic forest tree species. C. Kole and T. Hall (Eds). Wiley-Blackwell Publishing, Oxford, UK. PP 1-34. 2008.
• C.P. Joshi* and S.D. Mansfield: The cellulose paradox: simple molecule, complex biosynthesis. Current Opinion in Plant Biology. 10: 220-226, 2007.

• Jurgensen, M.F., Miller, C.A., Trettin, C.T., Page-Dumroese, D.S. 2019.  Bedding of wetland      soil: Effects of bed height and termite activity on wood decomposition. Soil Science     Society America Journal doi:10.2136/sssaj2018.12.0492

• Wang, W., Page-Dumroese, D., Jurgensen,, M.F., Miller, C., Walitalo, J., Chen, X., Liu, Y. 2019. Thinning effects on tree growth and decomposition of standard wood substrates in a pine plantation. Forest Ecology and Management 449:117451 OI:0.1016/j.foreco.2019.117451
• Page-Dumroese, D.S., Jurgensen, M.F., Miller, C.A., Pickens, J., Tirocke, J.M. 2019. Wildfire alters belowground and surface wood decomposition on two national forests in Montana, USA. International Journal of Wildland Fire 28: 456–469. doi.org/10.1071/WF18218
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• Kelly, M.C., R.H. Germain, and S. Bick. 2017 Impacts of forestry best management practices on logging costs and productivity in the Northeast U.S.A. Journal of Forestry. 115(6): 503-512. Read More
• Kelly, M.C., R.H. Germain, and S.A. Mack. 2016. Forest conservation programs and the landowners who prefer them: Profiling family forest owners in the New York City Watershed. Land Use Policy. 50 (17-28). Read More
• Kelly, M.C. and R.H. Germain. 2016. Is it efficient to single-handedly run a multi-machine harvesting operation? A case study from the Northeast United States. International Journal of Forest Engineering. 27(3): 140-150. Read More
• Germain, R.H., Bick, S., Kelly, M.C., Benjamin, J. and W. Ferrand. 2016. A case study of three high-performing contract loggers with distinct harvest systems: Are they thriving, striving or just surviving? Forest Products Journal 66(1/2):97–105. Read More
• Kelly, M.C., R.H. Germain, and S.V. Stehman. 2015. Family forest owner preferences for forest conservation programs: A New York case study. Forest Science. 61(3):597-603. Read More

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• Michelle Steen-Adams, David J. Mladenoff, Nancy E. Langston, Feng Liu, and Jun Zhu. 2011. “Influence of Biophysical Factors and Differences in Ojibwe Reservation Versus Euro-American Social Histories on Forest Landscape Change in Northern Wisconsin, USA.” Landscape Ecology 26 (8) (August 21): 1165-1178. Read More
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• Jacqueline A. Robinson, Jannikke RaÃàikkoÃànen, Leah M. Vucetich, John A. Vucetich, Rolf O. Peterson, Kirk E. Lohmueller1, Robert K. Wayne. 2019. Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction. Science Advances 29 May 2019, Vol. 5, no. 5, eaau0757 DOI: 10.1126/sciadv.aau0757
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• 1) Fang, Y, L. Chen, K. Lin, Y. Feng, P. Zhang, J. Sanders, X. Pan, Y. Wu, X. Wang, Z. Su, C. Chen, H. Wei*, W. Zhang*. 2019. Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice . Genome Research ( In press) ( IF =10.1 ) 

• Zheng, J., C. He, Y. Qin, G. Lin, D. Park, M. Sun, J. Li, X. Lu, C. Zhang, C. Zhang, D. D Bade, CT “Eddy” Yeh, E. Zeng, H. Wei, P. S. Schnable, G. Wang, S. Liu. 2018. Co-expression analysis aids in the identification of new genes in the epicuticular wax pathway. Plant Journal  ( In press)

• Deng, W., K. Zhang, S. Liu, P. Zhao and S. Xu and  H. Wei*.  2018. JRmGRN: Joint reconstruction of multiple gene regulatory networks with common hub genes using data from multiple tissues or conditions.   Bioinformatics .  https://doi.org/10.1093/bioinformatics/bty354.

• Peng, T., M. Qiao, H. Liu, S. Teotia, Y. Zhao, D. Zhao, L. Shi, B. Le, K. Rogers, C. Gunasekara, H. Duan, Y. Gu, L. Tian, Z. Zhang, F. Meng, L. Huang, Q. Chen, Z. Wang, J. Tang, X. Tang, H. Wei*, X. Chen*, Q. Zhao* and G. Tang*.  2018. A resource for inactivation of microRNAs using short tandem target mimic technology in model and crop plants. Molecular Plant ( In press )

• Gunasekara, C, K. Zhang, W. Deng, L. Brown and H. Wei*. 2018. TGMI: an efficient algorithm for identifying pathway regulators through evaluation of triple-gene mutual interaction. Nucleic Acids Res. 46(11):e67.

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• Ming, R., S. Hou, Y. Feng, Q. Yu, A. Dionne-Laporte, J. Saw, P. Senin, W. Wang, S. Salzberg, X. Wang, E. Lyons, D. Rice, M. Riley, R. Skelton, J. Murray, C. Chen, M. Eustice, E. Tong, H. Albert, R. E. Paull, M.-L. Wang, Y. Zhu, M. Schatz, N. Nagarajan, R. Agbayani, P. Guan, A. Blas, J. Wang, J.-K. Na, T. Michael, E. V. Shakirov, B. Haas, J. Thimmapuram, D. Nelson, H. Tang, J. E. Bowers, J. Suzuki, S. Tripathi, K. Neupane, H. Wei, R. Singh, B. Irikura, N. Jiang, W. Zhang, K. Wall, G. Presting, A. Gschwend, Y. Li, A. Windsor, R. N. Pérez, M. J. Torres, F. A. Feltus, B. Porter, M. Paidi, M.-C. Luo, L. Liu, D. Christopher, P. H. Moore, T. Sugimura, C. dePamphilis, J. Jiang, M. Schuler, T. Mitchell-Olds, D. Shippen, J. Palmer, M. R. Freeling, A. H. Paterson, D. Gonsalves, L. Wang and M. Alam. 2008. The genome sequence of transgenic papaya, Carica papaya. Nature, Vol. 452, No. 7190:991-996 Read More
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Wolfe, J. D., P. C. Stouffer, R. O. Bierregaard, Jr., D. Luther and T. E. Lovejoy. 2020. Effects of a regenerating matrix on the survival of birds in tropical forest fragments. Avian Research 11(8).  https://doi.org/10.1186/s40657-020-00193-x.

Wolfe, J. D. and P. Elizondo. 2020. Integrating bird conservation into ecosystem service payments and carbon offsets: a case study from Costa Rica. Conservation Science and practice  doi.org/10.1111/csp2.173.

Long, L. and  J. D. Wolfe. 2019. A Review the Science Directly Related to the Effects of Barred Owls (Strix varia) on Spotted Owls (Strix occidentalis). Journal of Wildlife Management 83:1281-1296.

Wolfe, J. D., J. D. Alexander, J. L. Stephens, and C. J. Ralph. 2019. A novel approach to understanding bird communities using informed diversity estimates at local and regional scales in northern California and southern Oregon. Ecology and Evolution 9:4431–4442.

Rutt, C., S. Midway, V. Jirinec,  J. D. Wolfe and P. C. Stouffer. 2018. Examining the microclimate hypothesis in Amazonian birds: Indirect tests of the ‘visual constraints’ mechanism. Oikos 128:798-810.

Ralph C. J., and  J. D. Wolfe. 2018. Factors affecting the distribution and abundance of autumn vagrant warblers in northwestern California and southern Oregon. PeerJ. 6: e5881

Johnson, E. I. and  J. D. Wolfe. 2017. Molt in Neotropical Birds: Life History and Aging Criteria. Studies in Avian Biology, CRC Press, Taylor and Francis Group, Boca Raton, Florida.

Wolfe, J. D., C. J. Ralph and A. K. Wiegardt. 2017. Bottom-up processes influence the demography and life-cycle phenology of Hawaiian bird communities. Ecology 98:2885-2899.

Wiegardt, K. A.,  J. D. Wolfe, C. J. Ralph, J. L. Stephens and J. D. Alexander. 2017. Elevational movements of songbirds after the breeding season. Journal of Ecology and Evolution 7:7750-7764.

West, C.,  J. D. Wolfe, A. K. Wiegardt and T. Williams-Claussen. 2017. Feasibility of California Condor recovery in northern California: assessing spatial and temporal patterns of contaminants using Surrogate species. Condor 119: 720-731. Cooper, J., O. Johnson, T. Davis, R. Terrill, K. Brzeski., J. D. Wolfe, A. Etingüe* and L. Powell. 2017. Notes on the distribution of the avifauna of Bioko Island, Equatorial Guinea, with one new country record. Malimbus 39:1-15.

Wiegardt, K. A., D. C. Barton and  J. D. Wolfe. 2017. Upslope molt migration of the Wilson’s Warbler in the Klamath-Siskiyou Bioregion. Journal of Ornithology 88:47-52.

• Yuan Y*, Chen C (2018) Widespread Antisense Transcription of Populus Genome under Drought. Molecular Genetics and Genomics 293(4): 1017-1033.
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• Xue L-J, Guo W, Yuan Y, Anino EO, Nyamdari B, Wilson MC, Frost CJ, Chen H-Y, BabstBA,Harding SA, Tsai CJ (2013) Constitutively Elevated Salicylic Acid Levels Alter Photosynthesis and Oxidative State but not Growth in Transgenic Populus. Plant Cell 25: 2714-2730.
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