Our faculty in the Department of Biological Sciences are involved in cutting-edge research. They have authored and contributed to a number of publications—both in prior work and during their tenure at Michigan Tech.
Select a year below for a complete list of faculty publications.
2019 2018 2017 2016 2015 2014 2013 2012
Select a faculty member below for some of their most recent publications.
Rupali Datta
- Tiwari M, Krishnamurthy S, Shukla D, Kiiskila J, Jain A, Datta R, Sharma N, Sahi SV (2016) Comparative transcriptome and proteome analysis to reveal the biosynthesis of gold nanoparticles in Arabidopsis. Nature Scientific Reports 6: 21733. DOI: 10.1038/srep21733 Read More
- Pidatala VR, Li K, Sarkar D, Wusirika R, Datta R (2016) Identification of biochemical pathways associated with lead tolerance and detoxification in Chrysopogon zizanioides L. Nash (vetiver) by metabolic profiling. Environ. Sci. Technol. 50 (5): 2530–2537 38, 868‐877. Read More
- Dhawi F, Datta R, Wusirika R (2016) Mycorrhiza and heavy metal resistant bacteria enhance growth, nutrient uptake and alter metabolic profile of sorghum grown in marginal soil. Chemosphere 157: 33–41 Read More
- Kiiskila JD, Das P, Sarkar D, Datta R (2015) Phytoremediation of Explosive-Contaminated Soils. Curr. Pollution Rep. 1: 23-34 (INVITED ARTICLE). Read More
- Punamiya P, Sarkar D, Rakshit S, Elzinga EJ, Datta R (2015) Immobilization of tetracyclines in manure and manure-amended soils using aluminum-based drinking water treatment residuals. Environ Sci Pollut Res. 23(4): 3322–3332 Read More
- Dhawi F, Datta R, Wusirika R (2015) Mycorrhiza and PGPB modulate maize biomass, nutrient uptake and metabolic pathways in maize grown in mining-impacted soil. Plant Physiol. Biochem. 97: 390–399. Read More
- Das P, Sarkar D, Makris KC, Datta R (2015) Urea-facilitated uptake and nitroreductase-mediated transformation of 2,4,6-trinitrotoluene in soil using vetiver grass. J. Environ. Chem. Eng. 3 (1): 445–452. Read More
- Li K, Pidatala R, Shaik , Datta R, Wusirika R (2014) Integrated metabolomic and proteomic approaches dissect the effect of metal resistant bacteria on maize biomass and copper uptake, Environ. Sci. Technol. 48: 1184-1193. Read More
- Nagar R, Sarkar D, Makris KC, Datta R (2014) Arsenic bioaccessibility and speciation in the soils amended with organoarsenicals and drinking-water treatment residuals based on a long-term greenhouse study. J. Hydrol. 518 (C): 477–485. Read More
- Rakshit S, Sarkar D, Elzinga EJ, Punamiya P, Datta R (2014) Surface complexation of oxytetracycline by magnetite: Effect of solution properties. Vadose Zone J. 13(2): 147 Read More
- Quazi S, Sarkar D and Datta R (2013) Human health risk from arsenical pesticide contaminated soils: A long-term greenhouse study. J. Hazardous Materials. 262 (15): 1031-1038. Read More
- Punamiya R, Sarkar D, Rakshit S, Datta R (2013) Effectiveness of Al-based Drinking Water Treatment Residual as a Novel Sorbent to Remove Tetracyclines from Aqueous Medium. J Environ Qual. 42(5): 1449-1459. Read More
- Das P, Sarkar R, Makris K, Punamiya P, Datta R (2013) Effectiveness of Urea in Enhancing the Extractability of 2,4,6 Trinitrotoluene from Chemically Variant Soil. Chemosphere: 93(9): 1811-1817. Read More
- Datta R, Das P, Smith S, Punamiya P, Ramanathan DM, Reddy R, Sarkar D (2013) Phytoremediation potential of vetiver grass [Chrysopogon zizanioides (l.)] For tetracycline. International. J. Phyto. 15: 343-351 Read More
Michael R. Gretz
- Domozych, D.S.,. Lambiasse, L., Kiemle, S.N.. and Gretz, M.R. 2009. Structure and biochemistry of charophycean cell walls. II. Cell wall development and bipolar growth in the desmid Penium margaritaceum. Asymmetry in a symmetric world. Journal of Phycology (in press)
- Bellinger, B.J., Underwood, G.J.C., Ziegler, S.E. and Gretz, M.R. 2009. The significance of diatom-derived polymers in carbon flow dynamics within estuarine biofilms determined through isotopic enrichment. Aquatic Microbial Ecology (in press).
- Domozych, D.S., Serfis, A., Kiemle, S. and Gretz, M.R. 2007. The structure and biochemistry of charophycean cell walls. I. Pectins of Penium margaritaceum. Protoplasma 230:99-115.
- Kiemle, S.N., Domozych, D.S. and Gretz, M.R. 2007. The exopolymers of desmids: Chemistry, structural analysis and implications in wetland biofilms. Phycologia 46:617-627.
- Domozych, D.S., Elliot, L, Kiemle, S.N. and Gretz, M.R. 2007. Pleurotaenium trabecula, a desmid of wetland biofilms: The extracellular matrix and adhesion mechanisms. Journal of Phycology 43:1022-1038.
- Abdullahi, A.S., Underwood, G.J.C., and Gretz, M.R. 2006. Extracellular matrix assembly in diatoms (Bacillariophyceae). V. Environmental effects on polysaccharide synthesis in the model diatom Phaeodactylum tricornutum. Journal of Phycology 42:363-378.
- Apoya, M.D., Liang, Y., Underwood, G.J.C. and Gretz, M.R. 2006. Movement modalities and responses to environmental changes of the mudflat diatom Cylindrotheca closterium. Journal of Phycology 42:379-390.
Erika I. Hersch-Green
- Walczyk A, and Hersch-Green, E. 2019. Impacts of soil nitrogen and phosphorus levels on cytotype performance of the circumboreal herb, Chamerion angustifolium (Onagraceae): implications for polyploid establishment. American Journal of Botany 106(7): 906-921.
- Bales A, and Hersch-Green, E. 2019. Diploid disadvantage disappears under increased soil nitrogen availability in fireweed, Chamerion angustifolium (Onagraceae). Ecology and Evolution 9(3):1095-1109.
- Bothwell H, Cushman S, Woolbright S, Hersch-Green E, Evans L, Allan G, Whitham T. 2017. Conserving threatened riparian ecosystems in the American West: Precipitation gradients and river networks drive genetic connectivity and diversity in a foundation riparian tree (Populus angustifolia). Molecular Ecology 26(19): 5114-5132. Read More
- Grady K, Wood T, Kolb T, Hersch-Green E, Shuster S, Gehring C, Hart S, Allan G, Whitham T. 2017. Local biotic adaptation of trees and shrubs to plant neighbors. Oikos 126(4): 583-593.
- Fischer D, Wimp G, Hersch-Green E, Bangert R, LeRoy C, Schweitzer J, Bailey J, Dirks C, Hart S, and Whitham T. 2017. Tree genetics strongly affect forest productivity, but intraspecific diversity-productivity relationships do not. Functional Ecology 31(2): 520-529.
- Hersch-Green E, Allan G, and Whitham T. 2014. Genetic analysis of admixture and patterns of introgression in foundation cottonwood tree (Salicaceae) in southwestern Colorado, USA. Tree Genetics and Genomes 10(3): 527-539. Read More
- Bangert, R., Ferrier, S. M., Evans, L., Kennedy, K., Grady, K. C., Hersch-Green, E. I., Allan, G. J., and T. G. Whitham. In Press. The proportion of three foundation plant species and their genotypes influence an arthropod community: restoration implications for the endangered southwestern willow flycatcher. Restoration Ecology
- Hersch-Green, E. I., H. Myburg, and M. T. Johnson. 2012. Adaptive molecular evolution of a defence gene in sexual but not functionally asexual evening primroses. Journal of Evolutionary Biology 25: 1576-1586.
- S.M. Ferrier, R.K. Bangert, E. I. Hersch-Green, J. K. Bailey, G.J. Allan, and T.G. Whitham. 2012. Unique arthropod communities on different host-plant genotypes results in greater arthropod diversity. Arthropod Plant Interactions 6: 187-195.
- Hersch-Green, E. I, N. Turley, and M. T. J. Johnson. 2011. Community genetics: what have we accomplished and where should we be headed? Phil. Trans. R. Soc. B. 366: 1453-1460.
- Hersch-Green, E.I., and R.C. Cronn. 2009. Tangled trios, or something entirely different? Characterizing a hybrid zone in Castilleja (Orobanchaceae). American Journal of Botany 96(8): 1519-1531.
- Hersch, E.I, and B. A. Roy. 2007. Context-dependant pollinator behavior: an explanation for patterns of hybridization among three species of Indian paintbrush. Evolution 61(1): 111- 124. Cover Photo.
- Hersch, E.I. 2006. Foliar damage to parental plants interacts to influence mating success of Ipomoea purpurea. Ecology 87(8): 2026-2036.
Casey J Huckins
- Van Goethem*, RR; Huckins, CJ; Marcarelli, AM. 2020. "Effects of Invasive Watermilfoil on Primary Production in Littoral Zones of North-Temperate Lakes." Diversity 12, no. 2: 82.
- Danhoff*, BM., and Huckins CJ. 2020. Modelling submerged fluvial substrates with structure-from-motion photogrammetry. River Research and Applications 36:128-137.
- Ortiz* JE, Marcarelli AM, Juneau KJ, Huckins CJ. 2019. Invasive Myriophyllum spicatum and nutrients interact to influence algal assemblages. Aquatic Botany 156:1-9. https://doi.org/10.1016/j.aquabot.2019.03.003 (Great Lakes Research Center Contribution no. 52).
- Marcarelli AM, Coble AA, Meingast KM, Kane ES, Brooks CN, Buffam I, Green SA, Huckins CJ, Toczydlowski D, Stottlemyer R. Early View (2019). Of small streams and Great Lakes: Integrating tributaries to understand the ecology and biogeochemistry of Lake Superior. Journal of the American Water Resources Association. https://doi.org/10.1111/1752-1688.1269.
- Goble*, CW., Auer, NA., Huckins, CJ, Danhoff*, BM., Holtgren, JM. and Ogren, SA. 2018. Fish Distributions and Habitat Associations in Manistee River, Michigan, Tributaries: Implications for Arctic Grayling Restoration. North Am J Fish Manage, 38: 469-486. doi:10.1002/nafm.10049.
- Danhoff*, BM., CJ Huckins, NA. Auer, CW. Goble, SA. Ogren, and JM. Holtgren. 2017. Abiotic Habitat Assessment for Arctic Grayling in a Portion of the Big Manistee River, Michigan. Transactions of the American Fisheries Society 146:645-662.
- Coble AA*, Marcarelli AM, Kane ES, Huckins CJ 2016. Uptake of ammonium and soluble reactive phosphorus in forested streams: influence of dissolved organic matter composition. Biogeochemistry 131:355-372.
- Feringa, M., C. Huckins,W. Mattes, E. Baker, T. Zorn, J. Littlefield, K. Scribner. 2016. "Genetic and phenotypic evidence for splake presence in brook trout and lake trout spawning habitats." Journal of Great Lakes Research 42(3): 738-742. Read More
- Marcarelli AM, Huckins CJ & Eggert SL. 2015. Sand aggradation alters biofilm standing crop and metabolism in a low-gradient Lake Superior tributary. Journal of Great Lakes Research 41: 1052-1059. doi:10.1016/j.jglr.2015.09.004.
- Ogren, S. A. and C. J. Huckins 2015 Culvert replacements: improvement of stream biotic integrity? Restoration Ecology 23(6): 821-828.
- Ogren, S.A., and C.J Huckins. 2015. Awareness of bias in fish indices of biotic integrity improves interpretation of bioassessment. North American Journal of Fisheries Management. (in Press)
- Ogren*, S. and C.J Huckins. 2014. Evaluation of suitability and comparability of stream assessment indices using macroinvertebrate data sets from the Northern Lakes and Forests Ecoregion. Ecological Indicators. Volume 40, May 2014, Pages 117–126
- Mirchi*, A., D.W. Watkins, Jr., C. J Huckins, K. Madani and P. Hjorth. 2014. Water resources management in a homogenizing world: Averting the growth and underinvestment trajectory. Water Resources Research (in press) Read More
- Scribner, K., Huckins, C. J., Baker, E., Kanefsky, J. 2012. Genetic relationships and gene flow between resident and migratory brook trout in the Salmon Trout River. Journal of Great Lakes Research. http://dx.doi.org/10.1016/j.jglr.2011.11.009. 38 (2012) 152–158
- Barkdoll, B.D. and C.J Huckins, 2012. The role of bridge scour in relation to stream restoration, Proceedings of the World Environmental and Water Resources Congress 2012 American Society of Civil Engineers, Reston, VA, (pp. 2546-2555).
- Harless, M. L., Huckins, C. J., Grant, J. B., Pypker, T. G. (2011). "Effects of six chemical deicers on larval wood frogs", Environmental Toxicity and Chemistry, Environmental Toxicology and Chemistry 30(7):1637–1641.
- Van Grinsven, M., Mayer, A. and Huckins, C. (2011), Estimation of Streambed Groundwater Fluxes Associated with Coaster Brook Trout Spawning Habitat. Ground Water. doi: 10.1111/j.1745-6584.2011.00856.x
- Huckins, C. J, .E. A. Baker, K. D. Fausch and J. B. K. Leonard. 2008. Ecology and Life History of Coaster Brook Trout Salvelinus fontinalis and Potential Bottlenecks in Their Rehabilitation. North American Journal of Fish Management. 28:1321–1342.
- Huckins, C. J., and E. A. Baker. 2008. Migrations and Biological Characteristics of Adfluvial Coaster Brook Trout in a South Shore Lake Superior Tributary. Transactions of the American Fisheries Society. 137:1229-1243.
- Webster, C. W., C. J F. Huckins, J. M. Shields. 2008. Spatial Distribution of Riparian Zone Coarse Woody Debris in a Managed Northern Temperate Watershed. American Midland Naturalist. in press.
- VanDusen, P. J., C. J Huckins, D. J. Flaspohler. 2005. Associations among selection logging history, brook trout, macroinvertebrates and habitat in Northern Michigan headwater streams. Transactions of the American Fisheries Society. 134:762-774.
- Osenberg, C. W., C. J F. Huckins, A. Kaltenberg, and A. Martinez. 2004. Resolving within and between population variation in feeding ecology with a biomechanical model of crushing force. Oecologia. 141:57-65
- Flaspohler, D. J., C. J F. Huckins, B. R. Bub, and P. J. VanDusen. 2002. Temporal patterns in aquatic and avian communities following selective logging. Forest Science 48:339-350.
- Klinger, R.C., R.F. Floyd, V.S. Blazer, and C.J Huckins. 2001. Nutritional disease of a Lake Victorian cichlid, haplochromis (Prognathrochromis perrieri); a clinical assessment. Journal of Aquariculture and Aquatic Sciences 9:228-236.
- Huckins, C. J F., C. W. Osenberg, and G. G. Mittelbach. 2000. Species introductions and ecological consequences: an example with congeneric sunfish. Ecological Applications 10:612:625.
- Huckins, C.JF. 1997. Linkages between morphology, feeding performance, diet, and competitive ability of molluscivorous sunfish. Ecology 78:2401-2414.
Chandrashekhar P. Joshi
- Shashank K. Pandey, Nookaraju Akula, Takeshi Fujino, Sivakumar Pattathil, and Chandrashekhar P. Joshi* (2016) Virus Induced Gene Silencing (VIGS) Mediated Functional Characterization of Two Genes Involved in Lignocellulosic Secondary Cell Wall Formation. Plant Cell Reports, 35:2353-2367.
- Puranik Swati, Kavitha S. Kumar, Oliver Gailing and Chandrashekhar P. Joshi* (2014) Modifying plant cell walls for bioenergy production. CAB Reviews 9, 017, pp 1-10.
- Nookaraju Akula, Shashank K. Pandey, Takeshi Fujino, Ju Young Kim, Mi Chung Suh, and Chandrashekhar P. Joshi* (2014) Enhanced Accumulation of Fatty Acids and Triacylglycerols in Transgenic Tobacco Stems for Enhanced Bioenergy Production. Plant Cell Reports 33 (7) 1041-1052.
- Sera Jung, Dae-Seok Lee, Yeon-Ok Kim, Chandrashekhar P. Joshi, and Hyeun-Jong Bae (2013) Improved recombinant cellulase expression in chloroplast of tobacco through promoter engineering and 5′ amplification promoting sequence. Plant Molecular Biology 83: 317–328. Published online in June 2013. DOI 10.1007/s11103-013-0088-2.
- Nookaraju A, Pandey SP, Bae HJ and Joshi CP* (2013) Designing cell walls for better bioenergy production. Molecular Plant 6 (1):8-10. doi: 10.1093/mp/sss111 First published online: October 5, 2012.
- Liu Y, Xu F, Gou J, Al-Haddad J, Telewski FW, Bae HJ and C. P. Joshi* (2012) Importance of Two Consecutive Methionines at the N-terminus of a Cellulose Synthase (PtdCesA8) for Normal Wood Cellulose Synthesis in Transgenic Aspen. Tree Physiology 32(11): 1403-1412 first published online October 17, 2012
- Chandrashekhar P. Joshi*, Shivegowda Thammannagowda, Takeshi Fujino, Jiqing Gou, Utku Avci, Candace H. Haigler, Lisa M. McDonnell, Shawn D. Mansfield, Bemnet Menghesa, Nicholas C. Carpita, Darby Harris, Seth DeBolt and Gary F. Peter (2011) Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen. Molecular Plant 4(2) 331-345.
- Zhu X, Pattahil S, Mazumdar K, Brehm A, Hahn MG. Dinesh-Kumar SP and C. P. Joshi* (2010) Virus-induced gene silencing offers a functional genomics platform for studying plant cell wall formation. Molecular Plant 3 (5): 818-833.
- Fuyu Xu and Chandrashekhar P. Joshi* (2010) Overexpression of Aspen Sucrose Synthase Gene Promotes Growth and Development of Transgenic Arabidopsis Plants. Advances in Biosciences and Biotechnology 1: 426-438.
- Manoj Kumar, Shivegowda Thammannagowda, Vincent Bulone, Vincent Chiang, Kyung-Hwan Han, Chandrashekhar P. Joshi, Shawn D. Mansfield, Ewa Mellerowicz, Björn Sundberg, Tuula Teeri, and Brian E. Ellis. An update on the nomenclature for the cellulose synthases genes from Populus. Trends in Plant Science 14(5):248-254, 2009.
- Shanfa Lu, Laigeng Li, Xiaoping Yi, Chandrashekhar P. Joshi, and Vincent L. Chiang: Differential expression of three eucalyptus secondary cell wall- related cellulose synthase genes in response to tension stress. Journal of Experimental Botany 59: 681-695, 2008.
- (Invited presentation) C.P. Joshi: Genetic engineering of poplars for biofuel production via altered synthesis of cellulose. Presented at Tree Biotechnology meeting at Whistler, BC, Canada during June 28-July 2, 2009.
- C. P. Joshi, Brunner A, Busov V, Meilan R, Thammanagowda S, Tsai C.: Poplars. In: Compendium of transgenic crop plants: Transgenic forest tree species. C. Kole and T. Hall (Eds). Wiley-Blackwell Publishing, Oxford, UK. PP 1-34. 2008.
- C.P. Joshi* and S.D. Mansfield: The cellulose paradox: simple molecule, complex biosynthesis. Current Opinion in Plant Biology. 10: 220-226, 2007.
Charles Kerfoot
- Kerfoot, W.C.; Hobmeier, M.M.; Green, S.A.; Yousef, F.; Brooks, C.N.; Shuchman, R.; Sayers, M.; Lin, L.; Luong, P.; Hayter, E.; Reif, M. Coastal Ecosystem Investigations with LiDAR (Light Detection and Ranging) and Bottom Reflectance: Lake Superior Reef Threatened by Migrating Tailings. Remote Sens. 2019, 11, 1076. https://doi.org/10.3390/rs11091076
- Kerfoot, W.C., N.R. Urban, C.P. McDonald, H. Zhang, R. Rossmann, J. Perlinger, T. Khan, A. Hendricks, M. Priyadarshini, M. Bolstad, 2018, Mining Legacy Across a Wetland Landscape: High Mercury in Upper Peninsula (Michigan) Rivers, Lakes, And Fish. Environ. Sci. Processes Impacts. 20: 708-733. http://dx.doi.org/10.1039/C7EM00521K ESPI Best Paper Nominees collection http://rsc.li/espi-nominees
- Staples, D.F., Maki, R.P., Hirsch, J.K., Kerfoot, W.C., LeDuc, J.F., Burri, T., Moraska Lafrancois, B. Glase, J. 2017. Decrease in young-of-the-year yellow perch growth rates following Bythotrephes longimanus invasion. Biol. Invasions. 19: 2197-2205 http://dx.doi.org/10.1007/s10530-017-1431-3
- Kerfoot, W.C., M.M. Hobmeier, F. Yousef. B. Moraska LaFrancois, R.P. Maki, J.K. Hirsch. 2016. A Plague of Waterfleas (Bythotrephes): Impacts on Microcrustacean Community Structure, Seasonal Biomass, and Secondary Production in a Large Inland-lake Complex. Biol. Invasions. 18 (4): 1121-1145 http://dx.doi.org/10.1007/s10530-015-1050-9
- Kerfoot, W.C., N.R. Urban C.P. McDonald, R. Rossmann, H. Zhang 2016. Legacy mercury releases during copper mining near Lake Superior. J. Great Lakes Res. 42(1): 50-61 http://dx.doi.org/10.1016/j.jglr.2015.10.007
- Kerfoot, W.C. and Savage, S.C. 2016. Multiple inducers in aquatic foodwebs: Counter-measures and vulnerability to exotics. Limnol. Oceanogr., 61: 382–406. 12 Nov 2015 http://dx.doi.org/10.1002/lno.10223
- Rowe, MD., D.R. Obenour, T.F. Nalepa, H.A. Vanderploeg, F. Yousef, W.C. Kerfoot. 2015. Mapping the spatial distribution of invasive dreissenid mussels on the winter-spring phytoplankton bloom in Lake Michigan. Freshwater Biology 60: 2197-2454, 6 Aug 2015 http://dx.doi.org/10.1111/fwb.12653
- Kerfoot, W.C., M.M. Hobmeier, F. Yousef, S.A. Green, R. Regis, C.N. Brooks, R. Shuchman, J. Anderson, and M. Reif. 2014. Light Detection and Ranging (LiDAR) and Multispectral Scanner Studies (MSS) Examine Coastal Environments Influenced by Mining. ISPRS Int. J. Geo-Inf 3: 66-95 http://dx.doi.org/10.3390/ijgi3010066
- Yousef, F., W.C. Kerfoot, R. Shuchman, and G. Fahnenstiel. 2014. Bio-optical properties and primary production of Lake Michigan: insights from 13-years of SeaWiFS imagery. J. Great Lakes Res. 40: 317-324 http://dx.doi.org/10.1016/j.jglr.2014.02.018
- Yousef, F., W.C. Kerfoot, C.N. Brooks, R. Shuchman, B. Sabol, and M. Graves. 2013. Using LiDAR to reconstruct the history of a coastal environment influenced by legacy mining. J. Great Lakes Res. 39 Sup. 1: 205-216 http://dx.doi.org/10.1016/j.jglr.2013.01.003
- Kerfoot, W.C., F. Yousef, S.A. Green, R. Regis, R. Shuchman, C.N. Brooks, M. Sayers, B. Sabol, M. Graves. 2012. Light Detection and Ranging (LiDAR) and Multispectral Studies of Disturbed Lake Superior Coastal Environments. Limnol. Oceanogr. 57(3): 749-771 http://dx.doi.org/10.4319/lo.2012.57.3.0749
- Kerfoot, W.C., F. Yousef, M. Hobmeier, R.P. Maki, S.T. Jarnagin, J.H. Churchill. 2011. Temperature, Recreational Fishing and Diapause Egg Connections: Dispersal of Spiny Water Fleas (Bythotrephes longimanus) Biol. Invasions. 13: 2513-2531 http://dx.doi.org/10.1007/s10530-011-0078-8
- Cooke, C.A., P.H. Balcom, W.C. Kerfoot, M.B. Abbott, A.P. Wolfe. 2011. Pre-Columbian Mercury Pollution with the Smelting of Argentiferous Ores in the Bolivian Andes. AMBIO 40: 18-25 http://dx.doi.org/10.1007/s13280-010-0086-4
- Kerfoot, W.C., F. Yousef, S.A. Green, J.W. Budd, D.J. Schwab, and H.A. Vanderploeg. 2010. Approaching storm: Disappearing winter bloom in Lake Michigan. J. Great Lakes Res. 36: Supplement 3: 30-41 https://doi.org/10.1016/j.jglr.2010.04.010
- Kerfoot, W.C. and A.S. McNaught. 2010. ‘Two-step’ dialogue between the cladoceran Bosmina and invertebrate predators: Induction and natural selection. Limnol. Oceanogr. 55(1) 403-419 https://doi.org/10.4319/lo.2010.55.1.0403
- Berendonk, T.U., K. Spitze, W.C. Kerfoot. 2009. Ephemeral metapopulations show high genetic diversity at regional scales. Ecology. 90(10): 2670-2675 https://doi.org/10.1890/08-0667.1
- Kerfoot, W.C., J.W. Budd, S.A. Green, J.B. Cotner, B.A. Biddanda, D.J. Schwab and H.A. Vanderploeg 2008. Doughnut in the desert: late-winter production pulse in southern Lake Michigan. Limnol. Oceanogr 53: 589-604 https://doi.org/10.4319/lo.2008.53.2.0589
Amy M Marcarelli
- Collins SF, Baxter CV, Marcarelli AM, Felicetti L, Florin S, Wipfli MS, Servheen G. 2020. Reverberating effects of resource exchanges in stream-riparian food webs. Oecologia 192:179-189. https://doi.org/10.1007/s00442-019-04574-y
- Marcarelli AM, Baxter CV, Benjamin JR, Miyake Y, Murakami M, Fausch KD, Nakano S. 2020. Magnitude and direction of stream-forest community interactions change with time scale. Ecology 101:e03064. https://doi.org/10.1002/ecy.3064
- Van Goethem RR, Huckins CJ, Marcarelli AM. 2020. Effects of invasive watermilfoil on primary production in littoral zones of north-temperate lakes. Diversity 12:82. https://doi.org/10.3390/d12020082
- Brooks CN, Grimm AG, Marcarelli AM, Dobson RJ. 2019. Multiscale collection and analysis of submerged aquatic vegetation spectral profiles for Eurasian watermilfoil detection. Journal of Applied Remote Sensing 13:037501. https://doi.org/10.1117/1.JRS.13.037501
- Coble AA, Marcarelli AM, Kane ES. 2019. Year-round measurements reveal seasonal drivers of nutrient uptake in a snowmelt-driven headwater stream. Freshwater Science 38:156-169. https://doi.org/10.1086/701733
- Marcarelli AM, Coble AA, Meingast KM, Kane ES, Brooks CN, Buffam I, Green SA, Huckins CJ, Toczydlowski D, Stottlemyer R. 2019. Of small streams and Great Lakes: Integrating tributaries to understand the ecology and biogeochemistry of Lake Superior. Journal of the American Water Resources Association 55:442-458. https://doi.org/10.1111/1752-1688.12695
- Ortiz JE, Marcarelli AM, Juneau KJ, Huckins CJ. 2019. Invasive Myriophyllum spicatum and nutrients interact to influence algal assemblages. Aquatic Botany 156:1-9. https://doi.org/10.1016/j.aquabot.2019.03.003 (Great Lakes Research Center Contribution no. 52).
- Eberhard EK, Marcarelli AM, Baxter CV. 2018. Co-occurrence of in-stream nitrogen fixation and denitrification across a nitrogen gradient in a western U.S. watershed. Biogeochemistry 139:179-195. https://doi.org/10.1007/s10533-018-0461-y (Great Lakes Research Center Contribution no. 48).
Guiliang Tang
- Ting Lan, Xiaoyu Yang, Jiwei Chen, Peng Tian, Lina Shi, Yu Yu, Lin Liu, Lei Gao, Beixin Mo, Xuemei Chen, Guiliang Tang (2022) Mechanism for the genomic and functional evolution of the MIR2118 family in the grass lineage. New Phytologist 233 (4), 1915-1930
- Ting Lan, Wei Xiong, Xuemei Chen, Beixin Mo, Guiliang Tang (2022) Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. The Plant Journal doi: 10.1111/tpj.15667
- Guiliang Tang, Sachin Teotia, Xiaoqing Tang, Deepali Singh (2021) RNA-Based Technologies for Functional Genomics in Plants. Springer (Book Editor).
- Jiwei Chen, Sachin Teotia, Ting Lan, Guiliang Tang (2021) MicroRNA Techniques: Valuable Tools for Agronomic Trait Analyses and Breeding in Rice. Frontiers in Plant Science, 1929
- T Yang, Y Wang, H Liu, W Zhang, M Chai, G Tang, Z Zhang (2020) MicroRNA1917-CTR1-LIKE PROTEIN KINASE 4 impacts fruit development via tuning ethylene synthesis and response. Plant Science 291, 110334
- S Teotia, D Singh, G Tang (2020) Technologies to Address Plant microRNA Functions. Plant microRNAs (Book), Springer, Cham pp25-43
- W Liu, Y Mao, J Schoenborn, Z Wang, G Tang, X Tang (2019) Whole blueberry protects pancreatic beta-cells in diet-induced obese mouse. Nutrition & metabolism 16 (1), 1-9
- T Peng, S Teotia, G Tang, Q Zhao (2019) MicroRNAs meet with quantitative trait loci: Small powerful players in regulating quantitative yield traits in rice. Wiley Interdisciplinary Reviews: RNA 10 (6), e1556
- G Tang (2019) Modulating Plant MicroRNAs by Short tandem Target Mimic (STTM) For Crop Improvement. PAG ASIA 2019 (Conference)
- Z Zhang, S Teotia, J Tang, G Tang (2019) Perspectives on microRNAs and phased small interfering RNAs in maize (Zea mays L.): functions and big impact on agronomic traits enhancement. Plants 8 (6), 170
- Y Wang, Z Wang, W Yang, X Xie, H Cheng, L Qin, G Tang, B Huang (2019) Degradation of fungal microRNAs triggered by short tandem target mimics is via the small-RNA-degrading nuclease. Applied and environmental microbiology 85 (9)
- Ya‐Fan Zhao, Ting Peng, Hong‐Zheng Sun, Sachin Teotia, Hui‐Li Wen, Yan‐Xiu Du, Jing Zhang, Jun‐Zhou Li, Guiliang Tang, Hong‐Wei Xue, Quan‐Zhi Zhao (2019) miR1432‐OsACOT (Acyl‐CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice. Plant biotechnology journal 17 (4), 712-723
- T Yang, Y Wang, S Teotia, Z Wang, C Shi, H Sun, Y Gu, Z Zhang, G Tang (2019) The interaction between miR160 and miR165/166 in the control of leaf development and drought tolerance in Arabidopsis. Scientific reports 9 (1), 1-13
- Peng T, Qiao M, Liu H, Teotia S, Zhang Z, Zhao Y, Wang B, Zhao D, Shi L, Zhang C, Le B, Rogers K, Gunasekara C, Duan H, Gu Y, Tian L, Nie J, Qi J, Meng F, Huang L, Chen Q, Wang Z, Tang J, Tang X, Wei H, Chen X, Zhao Q, Tang G. (2018) A Resource for Inactivation of microRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants. Mol Plant. 11(11): 1400-1417.
- Ya‐Fan Zhao, Ting Peng, Hong‐Zheng Sun, Sachin Teotia, Hui‐Li Wen, Yan‐Xiu Du, Jing Zhang, Jun‐Zhou Li, Gui-liang Tang, Hong‐Wei Xue, Quan‐Zhi Zhao. (2018) miR1432‐OsACOT (Acyl‐CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice. Plant biotechnology journal doi: 10.1111/pbi.13009. [Epub ahead of print]
- Lei Tian, Haiping Liu, Ligang Ren, Lixia Ku, Liuji Wu, Mingna Li, Shunxi Wang, Jinlong Zhou, Xiaoheng Song, Jun Zhang, Dandan Dou, Huafeng Liu, Guiliang Tang, Yanhui Chen. (2018) MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition. BMC plant biology 18 (1), 290.
- Chao Song, Xiao-Huang Qin, Qiao Zhou, Zi-Yang Wang, Wei-He Liu, Jun Li, Lan Huang, Yang Chen, Guiliang Tang, Dong-Jie Zhao, Zhong-Yi Wang. (2018) PlantES: A Plant Electrophysiological Multi-Source Data Online Analysis and Sharing Platform. Applied Sciences 8 (11), 2269.
- Wang Y, Shi C, Yang T, Zhao L, Chen J, Zhang N, Ren Y, Tang G, Cui D, Chen F. (2018) High-throughput sequencing revealed that microRNAs were involved in the development of superior and inferior grains in bread wheat. Sci Rep. 14;8(1): 13854.
- Yang, T., Wang, Y., Teotia, S., Zhang, Z., & Tang, G. (2018). The making of leaves: how small RNA networks modulate leaf development. Frontiers in plant science, 9, 824. Read More
- Liu, H., Yu, H., Tang, G., & Huang, T. (2018). Small but powerful: function of microRNAs in plant development. Plant cell reports, 1-14. Ream More
- Zhao, Y., Wen, H., Teotia, S., Du, Y., Zhang, J., Li, J., ... & Zhao, Q. (2017). Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.). BMC plant biology, 17(1), 215. Read More
- Teotia, S., Zhang, D., & Tang, G. (2017). Knockdown of Rice microRNA166 by Short Tandem Target Mimic (STTM). In Functional Genomics (pp. 337-349). Humana Press, New York, NY. Read More
- Tian, B., Wang, S., Todd, T. C., Johnson, C. D., Tang, G., & Trick, H. N. (2017). Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing. BMC genomics, 18(1), 572. Read More
- Teotia, S., & Tang, G. (2017). Silencing of Stress-Regulated miRNAs in Plants by Short Tandem Target Mimic (STTM) Approach. In Plant Stress Tolerance (pp. 337-348). Humana Press, New York, NY. Read More
- Yang M, Li C, Cai Z, Hu Y, Nolan T, Yu F, Yin Y, Xie Q, Tang G, Wang X. (2017) SINAT E3 Ligases Control the Light-Mediated Stability of the Brassinosteroid-Activated Transcription Factor BES1 in Arabidopsis. Dev Cell . 41(1): 47-58. DOI:10.1016/j.devcel.2017.03.014. Read More
- Zhang Z, Hu F, Sung MW, Shu C, Castillo-González C, Koiwa H, Tang G, Dickman M, Li P, Zhang X (2017) RISC-Interacting Clearing 3'- 5' Exoribonucleases (RICEs) degrade uridylated cleavage fragments to maintain functional RISC in Arabidopsis. Elife DOI:10.7554/eLife.24466. Read More
- Zhang H, Zhang J, Yan J, Gou F, Mao Y, Tang G, Botella JR, Jian-Kang Zhu (2017) Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits. Proc Natl Acad Sci U S A. DOI:10.1073/pnas.1703752114. Read More
- Wanzhen LI, Yulong WANG, Jianyu ZHU, Zhangxun WANG, Guiliang TANG, Bo HUANG (2017)Differential DNA methylation may contribute to temporal and spatial regulation of gene expression and the development of mycelia and conidia in entomopathogenic fungus Metarhizium robertsii. Fungal Biology (Online) Read More
- Jun Yan, Chunzhao Zhao, Jianping Zhou, Yu Yang, Pengcheng Wang, Xiaohong Zhu, Guiliang Tang, Ray A. Bressan, Jian-Kang Zhu (2016) The miR165/166 Mediated Regulatory Module Plays Critical Roles in ABA Homeostasis and Response in Arabidopsis thaliana. Plos Genetics DOI:10.1371/journal.pgen.1006416. Read More
- Yang Chen, Dong-Jie Zhao, Zi-Yang Wang, Zhong-Yi Wang, Guiliang Tang, and Lan Huang (2016) Plant Electrical Signal Classification Based on Waveform Similarity. Algorithms 9(4), 70. Read More
- Lina Shi, Xiaoqing Tang, Guiliang Tang (2016) GUIDE-seq to Detect Genome-wide Double-Stranded Breaks in Plants. Trends in Plant Science 21(10): 815-818. Read More
- Sachin Teotia, Deepali Singh, Xiaoqing Tang, Guiliang Tang (2016) Essential RNA-Based Technologies and Their Applications in Plant Functional Genomics. Trends in Biotechnology. 34(2):106-23. Read More
- Wu X, Ding D, Shi C, Xue Y, Zhang Z, Tang G, Tang J. (2016) microRNA-dependent gene regulatory networks in maize leaf senescence. BMC Plant Biol. 16:73. doi: 10.1186/s12870-016-0755-y. Read More
- Wang X, Chen L, Jin H, Wang S, Zhang Y, Tang X, Tang G (2016) Screening miRNAs for early diagnosis of colorectal cancer by small RNA deep sequencing and evaluation in a Chinese patient population. OncoTargets and Therapy. 9: 1159-1166. Read More
- Zhang Z, Wu X, Shi C, Wang R, Li S, Wang Z, Liu Z, Xue Y, Tang G, Tang J. (2016) Genetic dissection of the maize kernel development process via conditional QTL mapping for three developing kernel-related traits in an immortalized F2 population. Mol Genet Genomics. 291(1):437-54. Read More
- Chi M, Bhagwat B, Tang G, Xiang Y. (2016) Knockdown of Polyphenol Oxidase Gene Expression in Potato (Solanum tuberosum L.) with Artificial MicroRNAs. Methods Mol Biol. 1405:163-78. Read More
- Bhagwat B, Chi M, Han D, Tang H, Tang G, Xiang Y. (2016) Design, Construction, and Validation of Artificial MicroRNA Vectors Using Agrobacterium-Mediated Transient Expression System. Methods Mol Biol. 1405:149-62. Read More
- Sachin Teotia and Guiliang Tang (2015) To bloom or not to bloom: Role of microRNAs in plant flowering. Molecular Plant 8(3): 359-377 (Highly Cited) Read More
- Xiaoyun Jia, Na Ding, Weixin Fan, Jun Yan, Yiyou Gu, Xiaoqing Tang, Runzhi Li, Guiliang Tang (2015) Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Science, 233: 11-21. Read More
- Zhenying Cai, Jingjing Liu, Haijiao Wang, Cangjing Yang, Yuxiao Chen, Yongchi Li, Shanjin Pan, Rui Dong, Guiliang Tang, Juan de Dios Barajas-Lopez, Hiroaki Fujii, and Xuelu Wang (2014) GSK3-like kinases positively modulate abscisic acid signaling through phosphorylating subgroup III SnRK2s in Arabidopsis. Proc Natl Acad Sci U S A. 111(26): 9651-6 Read More
- Peng T, Sun H, Qiao M, Zhao Y, Du Y, Zhang J, Li J, Tang G, Zhao Q. (2014) Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice. BMC Plant Biol. 2014 Jul 23;14(1):196. Read More
- James Wong, Lei Gao, Yang Yang, Jixian Zhai, Siwaret Arikit, Yu Yu, Shuyi Duan, Vicky Chan, Qin Xiong, Jun Yan, Shengben Li, Renyi Liu, Yuanchao Wang, Guiliang Tang, Blake C. Meyers, Xuemei Chen and Wenbo Ma (2014) Roles of Small RNAs in Soybean Defense against Phytophthora sojae Infection. Plant J. 2014 Jun 18. doi: 10.1111/tpj.12590. [Epub ahead of print] Read More
- Chi M, Bhagwat B, Lane WD, Tang G, Su Y, Sun R, Oomah BD, Wiersma PA, Xiang Y. (2014) Reduced polyphenol oxidase gene expression and enzymatic browning in potato (Solanum tuberosum L.) with artificial microRNAs. BMC Plant Biol. 11;14(1):62. Read More
- Tang G and Tang X. (2013) Short Tandem Target Mimic: A Long Journey to the Engineered Molecular Landmine for Selective Destruction/Blockage of microRNAs in Plants and Animals. Journal of Genetics and Genomics. 40 (6): 291–296. Read More
- Bhagwata B, Chia M, Su L, Tang H, Tang G., Xiang Y. (2013) An in vivo Transient Expression System Can Be Applied for Rapid and Effective Selection of Artificial microRNA Constructs for Plant Stable Genetic Transformation. Journal of Genetics and Genomics. 40(5): 261-70. Read More
- Tang G*, Yan J, Gu Y, Qiao M, Fan R, Mao Y, Tang X*. (2012) Construction of short tandem target mimic (STTM) to block the functions of plant and animal microRNAs. Methods 58(2):118-25.(*Corresponding authors) Read More
- Yan J, Gu Y, Jia X, Kang W, Pan S, Tang X, Chen X, Tang G. (2012) Effective small RNA destruction by the expression of a short tandem target mimic in Arabidopsis. Plant Cell. 24(2):415-27. (Highly Cited) Read More
- Lewis RW, Tang G, McNear DH Jr. (2012) Morphological and genetic changes induced by excess Zn in roots of Medicago truncatula A17 and a Zn accumulating mutant. BMC Res Notes. 5(1):657 Read More
- Ren L. and Tang G. (2012) Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Science, 187: 59-68 Read More
- Dianwei Han, Jun Zhang, and Guiliang Tang (2012) MicroRNAfold: pre-microRNA secondary structure prediction based on Modified NCM model with thermodynamics-based scoring strategy. International Journal of Data Mining and Bioinformatics 6(3):272-91 Read More
- Iyer NJ, Jia X, Sunkar R, Tang G, Mahalingam R. (2012) microRNAs responsive to ozone-induced oxidative stress in Arabidopsis thaliana. Plant Signal Behav 7(4):484 - 491. Read More
- Lijuan Ji, Xigang Liu, Jun Yan, Wenming Wang, Rae Eden Yumul, Yu Ju Kim, Thanh Theresa Dinh, Jun Liu, Xia Cui, Binglian Zheng, Manu Agarwal, Chunyan Liu, Xiaofeng Cao, Guiliang Tang, and Xuemei Chen* (2011) ARGONAUTE10 and ARGONAUTE1 Regulate the Termination of Floral Stem Cells through Two microRNAs in Arabidopsis. PLoS Genet. 7(3):e1001358. Epub 2011 Mar 31. Read More
- Xiaoyun Jia, Jun Yan, and Guiliang Tang (2011) MicroRNA-mediated DNA methylation in plants. Frontiers in Biology 6(2):133-139 Read More
- Tang X, Tang X, Gal J, Kyprianou N, Zhu H, Tang G. (2011) Detection of microRNAs in prostate cancer cells by microRNA array. Methods Mol Biol. 732:69-88. Read More
- Dianwei Han, Guiliang Tang, and Jun Zhang (2011) A Parallel Strategy for Predicting the Secondary Structure of Polycistronic MicroRNAs. Int. J. Bioinformatics Research and Applications (In press)
- Guiliang Tang (2010) Plant microRNAs: An insight into their gene structures and evolution. Seminars in Cell and Developmental Biology 21:782-789. Read More
- Wang WX, Wilfred BR, Madathil SK, Tang G, Hu Y, Dimayuga J, Stromberg AJ, Huang Q, Saatman KE, Nelson PT (2010) MiR-107 Regulates Granulin/Progranulin with Implications for Traumatic Brain Injury and Neurodegenerative Disease. Am J Pathol. 177(1):334-45 Read More
Xiaohu (Mark) Tang
https://scholar.google.com/citations?user=aVnJKE4AAAAJ&hl=en
- Tahiyat Alothaim, Morgan Charbonneau, Xiaohu Tang. The HDAC6 inhibitors promote the synthetic lethality of cysteine in breast cancer. Sci Rep 11, 10956 (2021). https://doi.org/10.1038/s41598-021-90527-6
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Zhihong Wang, Ramkumar Mohan, Xinqian Chen, Katy Matson, Jackson Waugh, Yiping Mao, Shungang Zhang, Wanzhen Li, Xiaohu Tang, Leslie S Satin, Xiaoqing Tang. microRNA-483 Protects Pancreatic β-Cells by Targeting ALDH1A3. Endocrinology 2021 May 1;162(5). https://doi.org/10.1210/endocr/bqab031
- Lin, CC., Yang, WH., Lin, YT. et al. DDR2 upregulation confers ferroptosis susceptibility of recurrent breast tumors through the Hippo pathway. Oncogene 40, 2018–2034 (2021). https://doi.org/10.1038/s41388-021-01676-x
- Yiping Mao, Jacob Schoenborn, Zhihong Wang, Xinqian Chen, Ramkumar Mohan, Shungang Zhang, Xiaohu Tang. Anoop Arunagiri, Peter Arvan, Xiaoqing Tang. Overexpression of microRNA-30d in pancreatic beta-cells leads to a progressive beta-cell failure. Submitted
- Lin CC, Mabe NW, Lin YT, Yang WH, Tang X, Hong L et al. RIPK3 upregulation confers robust proliferation and collateral cystine-dependence on breast cancer recurrence. Cell Death Differ 2020; 27: 2234-2247
- β-Hydroxy-β-Methylbutyrate supplementation preserves muscle mass and reduces tumor growth in obese mice. MF Coleman, KA Liu, X Tang, S Fabela, LM Lashinger, Z Cui, SD Hursting. Cancer Research 2019; 79 S13, 1090-1090
- Walzer KA, Kubicki DM, Tang X, Chi JT. Single-Cell Analysis Reveals Distinct Gene Expression and Heterogeneity in Male and Female Plasmodium falciparum Gametocytes. mSphere 2018; 3.
- Lin CC, Kitagawa M, Tang X, Hou MH, Wu J, Qu DC et al. CoA synthase regulates mitotic fidelity via CBP-mediated acetylation. Nat Commun 2018; 9: 1039.
- Bowers LW, Rossi EL, McDonell SB, Doerstling SS, Khatib SA, Lineberger CG et al. Leptin Signaling Mediates Obesity-Associated CSC Enrichment and EMT in Preclinical TNBC Models. Mol Cancer Res 2018; 16: 869-879.
- Tang X, Ding CK, Wu J, Sjol J, Wardell S, Spasojevic I et al. Cystine addiction of triple-negative breast cancer associated with EMT augmented death signaling. Oncogene 2017; 36: 4235-4242.
- Tang X, Ding CK, Wu J, Sjol J, Wardell S, Spasojevic I et al. Cystine addiction of triple-negative breast cancer associated with EMT augmented death signaling. Oncogene 2017; 36: 4379.
- Tang X, Wu J, Ding CK, Lu M, Keenan MM, Lin CC et al. Cystine Deprivation Triggers Programmed Necrosis in VHL-Deficient Renal Cell Carcinomas. Cancer Res 2016; 76: 1892-1903.
- Tang X, Keenan MM, Wu J, Lin CA, Dubois L, Thompson JW et al. Comprehensive profiling of amino acid response uncovers unique methionine-deprived response dependent on intact creatine biosynthesis. PLoS Genet 2015; 11: e1005158.
- Keenan MM, Liu B, Tang X, Wu J, Cyr D, Stevens RD et al. ACLY and ACC1 Regulate Hypoxia-Induced Apoptosis by Modulating ETV4 via α-ketoglutarate. PLoS Genet 2015; 11: e1005599.
- Tang X, Lin CC, Spasojevic I, Iversen ES, Chi JT, Marks JR. A joint analysis of metabolomics and genetics of breast cancer. Breast Cancer Res 2014; 16: 415.
- Lamonte G, Tang X, Chen JL, Wu J, Ding CK, Keenan MM et al. Acidosis induces reprogramming of cellular metabolism to mitigate oxidative stress. Cancer Metab 2013; 1: 23.
- Tang X, Seyb KI, Huang M, Schuman ER, Shi P, Zhu H et al. A high-throughput screening method for small-molecule inhibitors of the aberrant mutant SOD1 and dynein complex interaction. J Biomol Screen 2012; 17: 314-326.
- Tang X, Lucas JE, Chen JL, LaMonte G, Wu J, Wang MC et al. Functional interaction between responses to lactic acidosis and hypoxia regulates genomic transcriptional outputs. Cancer Res 2012; 72: 491-502.
Xiaoqing Tang
- W Liu, Y Mao, J Schoenborn, Z Wang, G Tang, X Tang (2019) Whole blueberry protects pancreatic beta-cells in diet-induced obese mouse. Nutrition & metabolism 16 (1), 1-9
- Peng T, Qiao M, Liu H, Teotia S, Zhang Z, Zhao Y, Wang B, Zhao D, Shi L, Zhang C, Le B, Rogers K, Gunasekara C, Duan H, Gu Y, Tian L, Nie J, Qi J, Meng F, Huang L, Chen Q, Wang Z, Tang J, Tang X, Wei H, Chen X, Zhao Q, Tang G. (2018) A Resource for Inactivation of microRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants. Mol Plant. 11(11): 1400-1417.
- Lina Shi, Xiaoqing Tang, Guiliang Tang (2016) GUIDE-seq to Detect Genome-wide Double-Stranded Breaks in Plants. Trends in Plant Science 21(10): 815-818. Read More
- Sachin Teotia, Deepali Singh, Xiaoqing Tang, Guiliang Tang (2016) Essential RNA-Based Technologies and Their Applications in Plant Functional Genomics. Trends in Biotechnology 34 (2): 106-23. Read More
- Wang X, Chen L, Jin H, Wang S, Zhang Y, Tang X, Tang G (2016) Screening miRNAs for early diagnosis of colorectal cancer by small RNA deep sequencing and evaluation in a Chinese patient population. OncoTargets and Therapy. 9: 1159-1166. Read More
- Mohan R, Mao Y, Zhang S, Zhang YW, Xu CR, Gradwohl G, Tang X. (2015) Differentially Expressed MicroRNA-483 Confers Distinct Functions in Pancreatic β- and α-Cells. J Biol Chem. 290(32):19955-66. Read More
- Xiaoyun Jia, Na Ding, Weixin Fan, Jun Yan, Yiyou Gu, Xiaoqing Tang, Runzhi Li, Guiliang Tang (2015) Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Science, 233: 11-21. Read More
- Mao Y, Mohan R, Zhang S, Tang X. (2013) MicroRNAs as pharmacological targets in diabetes. Pharmacol Res. (In press. doi:pii: S1043-6618(13)00102-3. 10.1016/j.phrs.2013.06.005.) Read More
- Tang G* and Tang X*. (2013) Short Tandem Target Mimic: A Long Journey to the Engineered Molecular Landmine for Selective Destruction/Blockage of microRNAs in Plants and Animals. Journal of Genetics and Genomics. 40 (6): 291–296. Read More
- Tang G*, Yan J, Gu Y, Qiao M, Fan R, Mao Y, Tang X*. (2012) Construction of short tandem target mimic (STTM) to block the functions of plant and animal microRNAs. Methods (in press, *Corresponding authors) Read More
- Zhao X, Mohan R, Ozcan S, Tang X. (2012) MicroRNA-30d Induces Insulin Transcription Factor MafA and Insulin Production by Targeting Mitogen-activated Protein 4 Kinase 4 (MAP4K4) in Pancreatic β-Cells. J Biol Chem. 287(37):31155-64. Read More
- Tang, X., Muniappan, L., Tang, G., and Ozcan, S. (2009) Identification of glucose-regulated miRNAs from pancreatic beta cells reveals a role for miR-30d in insulin transcription. RNA 15:287-293.
- Tang, X.*, Tang, G., and Özcan S*. (2008) Role of microRNAs in diabetes. BBA-Gene Regulatory Mechanisms. 1779: 697-701 (* Corresponding authors).
- Tang, G., Tang, X., Mendu, V., Tang, XH., and Jia, X. (2008) The art of microRNA: Various strategies leading to gene silencing via an ancient pathway. BBA-Gene Regulatory Mechanisms. 1779: 655-662.
- Tang, G., Xiang, Y., Kang, Z., Mendu, V., Tang, X., Jia, X., and Tang, X. (2008) Small RNA technologies: siRNA, miRNA, antagomiR, target mimicry, miRNA sponge and miRNA profiling. Current Perspectives in MicroRNAs (miRNA), Springer Netherlands, pp 17-33.
- Tang, X., Gal J., Zhang X., Zhu H. and Tang G. (2007) A simple array platform for microRNA analysis and its application in mouse tissues. RNA 13,1803-22.
- Tang, X., Guilherme A, Chakladar A, Powelka AM, Konda S, Virbasius JV, Nicoloro SM, Straubhaar J, Czech MP. (2006) An RNA interference-based screen identifies MAP4K4/NIK as a negative regulator of PPAR gamma, adipogenesis, and insulin-responsive hexose transport. Proc Natl Acad Sci U S A. 103, 2087-2092.
- Powelka, A.M., Seth, A., Virbasius, J.V., Kiskinis, E., Nicoloro, S.M., Guilherme, A., Tang, X., Straubhaar, J., Cherniack, A.D., Parker, M.G., Czech, M.P. (2006) Suppression of oxidative metabolism and mitochondrial biogenesis by the transcriptional corepressor RIP140 in mouse adipocytes. J Clin Invest. 116,125-136.
- Tang, X., Powelka, A.M., Soriano, N.A., Czech, M.P. and Guilherme A. (2005) PTEN, but not SHIP2, suppresses insulin signaling through the phosphatidylinositol 3-kinase/Akt pathway in 3T3-L1 Adipocytes. J Biol Chem. 280,22523-22529.
- Zhou, Q.L., Park, J.G., Jiang, Z.Y., Holik, J.J., Mitra, P., Semiz, S., Guilherme, A., Powelka, A.M., Tang, X., Virbasius, J., Czech, M.P. (2004) Analysis of insulin signaling by RNAi-based gene silencing. Biochem Soc Trans. 32(Pt 5), 817-821.
Stephen Techtmann
- Ghannam, R. B., & Techtmann, S. M. (2021). Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring. Computational and Structural Biotechnology Journal. Link
- Christian, W. C., Butler, T. M., Ghannam, R. B., Webb, P. N., & Techtmann, S. M. (2020). Phylogeny and diversity of alkane-degrading enzyme gene variants in the laurentian great lakes and western atlantic. FEMS Microbiology Letters, 367(23), fnaa182. Link
- Schaerer, L. G., Webb, P. N., Corazzola, A., Christian, W. C., & Techtmann, S. M. (2020). Impact of air, water, and dock microbial communities on boat microbial community composition. Journal of Applied Microbiology. Link
- Miller JI, Techtmann S, Joyner D, Mahmoudi N, Fortney J, Fordyce JA, GaraJayeva N, Askerov FS, Cravid C, Kuijper M, Pelz O, Hazen TC.2020. Microbial Communities across Global Marine Basins Show Important Compositional Similarities by Depth. mBio 11:e01448-20. Link
- Ghannam, R. B., Schaerer, L. G., Butler, T. M., & Techtmann, S. M. (2020). Biogeographic Patterns in Members of Globally Distributed and Dominant Taxa Found in Port Microbial Communities. Msphere, 5(1). Link
- Schaerer, L. G., Ghannam, R. B., Butler, T. M., & Techtmann, S. M. (2019). Global comparison of the bacterial communities of bilge water, boat surfaces, and external port water. Applied and environmental microbiology, 85(24). Link
- Campa, M. F., Wolfe, A. K., Techtmann, S. M., Harik, A. M., & Hazen, T. C. (2019). Unconventional Oil and Gas Energy Systems: An Unidentified Hotspot of Antimicrobial Resistance?. Frontiers in microbiology, 10, 2392. Link
- Butler, T. M., Wilhelm, A. C., Dwyer, A. C., Webb, P. N., Baldwin, A. L., & Techtmann, S. M. (2019). Microbial community dynamics during lake ice freezing. Scientific reports, 9(1), 1-11. Link
- Campa, M.F., Techtmann, S.M., Gibson, C.M., Zhu, X., Patterson, M., Garcia de Matos Amaral, A., Ulrich, N., Campagna, S.R., Grant, C.J., Lamendella, R. and Hazen, T.C., 2018. Impacts of glutaraldehyde on microbial community structure and degradation potential in streams impacted by hydraulic fracturing. Environmental science & technology, 52(10), pp.5989-5999 Link
- Smith, M.B; Rocha. A.M.; Oleson, S.W.; Paradis, C.; Smillie, C.S.; Campbell. J.H.; Fortney, J.L.; Mehlhorn, T.L.; Lowe. K.A.; Earles, J.E.; Phillips, J.; Techtmann, S.M.; Joyner, D.C.; Preheim, S.P.; Sanders, M.S.; Mueller, M.A; Brooks, S.; Watson, D.B.; Wu, L; Zhang, P.; He, Z.; Zhou, J.; Adams, M.W.W.; Lancaster, A.; Poole, F.; Adams, P.D.; Arkin, A.P.; Fields, M.; Alm, E.J.; Hazen, T.C. (2015) Natural bacterial communities as quantitative biosensors. 6.3 (2015): e00326-15. Link
- Techtmann, S.M.; Lebedinsky, A.V.; Colman, A.S.; Sokolova, T.G.; Woyke, T.; Goodwin, L; Robb, F.T. (2012) Evidence for Horizontal Gene Transfer of Anaerobic Carbon Monoxide Dehydrogenases. Front. Microbio. - Evolutionary and Genomic Microbiology 3:132 Link
- Techtmann, S.M.; Ghirlando, R.; Kao, S.; Strebel, K; Maynard, E. (2012) Hydrodynamic and Functional Analysis of HIV-1 Vif Oligomerization, Biochemistry. 2012 Feb 27. Link
- Techtmann S.M., Colman A.S., Murphy M.B., Schackwitz W., Goodwin L., Robb F.T. (2011) Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria. Front. Microbio. - Evolutionary and Genomic Microbiology 2: 147 Epub 2011 Jul 11 Link
- Techtmann S.M., Robb, F.T. (2010) Archaeal-like Chaperonins in Bacteria. Proc Natl Acad Sci U S A. 107(47):20269-74. Epub 2010 Nov 5. Link
- Techtmann, S.M., Colman, A.S., Robb, F.T. (2009) “That Which Does Not Kill Us Only Makes Us Stronger”: The Role of Carbon Monoxide in Thermophilic Microbial Consortia, Environmental Microbiology 11(5); 1027 - 1037 Link
Thomas Werner
- Werner, T., Steenwinkel, T., Jaenike, J. (2017) Drosophilids of the Midwest and Northeast. (Version 2) J. Robert Van Pelt and John and Ruanne Opie Library, Michigan Technological University. Houghton, Michigan. ISBN: 978-1-7326524-0-8 (E-Book, 345 pages) Read More
- Scott Chialvo C. H. and Werner, T. (2018) Drosophila, destroying angels, and deathcaps! Oh my! A review of mycotoxin tolerance in the genus Drosophila. Frontiers in Biology. April 24, 1-12. Read More
- Werner, T. (2017) The Drosophilids of a Pristine Old-Growth Northern Hardwood Forest. The Great Lakes Entomologist, 50 (2), 68-78. (Cover) Read More
- Werner, T. and Jaenike, J. (2017) Drosophilids of the Midwest and Northeast. River Campus Libraries, University of Rochester. Rochester, New York.
- Mitchell, C.M., Latuszek, C.E., Vogel, K.R., Greenlund, I.M., Hobmeier, R.E., Ingram, O.K., Dufek, S.R., Pecore, J.L., Nip, F.R., Johnson, Z.J., Ji, X., Wei, H., Gailing, O., Werner, T. (2017) Alpha-Amanitin Resistance in Drosophila melanogaster: A Genome-Wide Association Approach. PLoS ONE, Feb 27;12(2):e0173162. doi: 10.1371/journal.pone.0173162. Read More
- Zhang, J., Li, C., Dutta, C., Zhang, S., Tiwari, A, Werner, T., Luoc, F-T, Liu, H. (2017) A Novel Near-infrared Fluorescent Probe for Sensitive Detection of β-Galactosidase. Analytica Chimica Acta, 968, 97-104. Read More
- Koshikawa, S., Giorgianni, M.W., Vaccaro, K., Yoder, J.H., Werner, T., Carroll, S.B. (2015) The gain of cis-regulatory activities underlies novel domains of wingless gene expression in Drosophila. Proc Natl Acad Sci USA Published ahead of print doi: 10.1073/pnas.1509022112 Read More
- Mitchell, C.M., Yeager, R.D., Johnson, Z.J., D’Annunzio, S.E., Vogel, K.R., Werner, T. (2015) Long-term resistance of Drosophila melanogaster to the mushroom toxin alpha-amanitin. PLoS ONE May 15 DOI:10.1371/journal.pone.0127569 Read More
- Werner T. (2015) Leopard spots and zebra stripes on fruit fly wings. Nature Education 8(2):3
- Mitchell, C.M., Saul, M.C., Lei, L., Wei, H., Werner, T. (2014) The Mechanisms Underlying Alpha-Amanitin Resistance in Drosophila melanogaster: A Microarray Analysis. PLoS ONE. Apr 2;9(4):e93489. doi: 10.1371/journal.pone.0093489 Read More
- Bray, M.J., Werner, T., Dyer, K.A. (2014) Two genomic regions together cause dark abdominal pigmentation in Drosophila tenebrosa. Heredity 112, 454-462. (11 December 2013) doi:10.1038/hdy.2013.124 Read More
- Werner T., Koshikawa S., Williams T.M., Carroll S.B. (2010) Generation of a novel wing color pattern by the Wingless morphogen. Nature, Vol. 464, pp. 1143-1148. Read More
- Rebeiz M., Ramos-Womack M., Jeong S., Andolfatto P., Werner T., True J., Stern D.L., Carroll S.B. (2009) Evolution of the tan Locus Contributed to Pigment Loss in Drosophila santomea: A Response to Matute et al. Cell, Vol. 139, pp. 1189-1196. Read More
- Williams T.M. , Selegue J.E., Werner T., Gompel N., Kopp A., and Carroll S. B. (2008) The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila. Cell, Vol. 134, pp. 610–623. Read More
- Jeong S., Rebeiz M., Andolfatto P., Werner T., True J., Carroll S.B. (2008) The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species. Cell, Vol. 132, pp. 783-93. Read More
- Werner T., Borge-Renberg K., Mellroth P., Steiner H. and Hultmark D. (2003) Functional diversity of the Drosophila PGRP-LC gene cluster in the response to LPS and peptidoglycan. J Biol Chem, Vol. 278, Issue 29, pp. 26319-22. Read More
- Choe K.M., Werner T., Stoven S., Hultmark D, Anderson K.V. (2002). Requirement for a Peptidoglycan Recognition Protein (PGRP) in Relish Activation and Antibacterial Immune Responses in Drosophila. Science, Vol. 296, Issue 5566, pp. 359-62. Read More
- Werner, T., Liu, G., Kang, D., Ekengren, S., Steiner, H. and Hultmark, D. (2000). A family of peptidoglycan recognition proteins in the fruit fly Drosophila melanogaster. Proc Natl Acad Sci USA, Vol. 97, Issue 25, pp. 13772-7. Read More