Our faculty in the Department of Biological Sciences are involved in cutting-edge research. They have authored and contributed to a number of publications—both in prior work and during their tenure at Michigan Tech.
Select a year below for a complete list of faculty publications.
2018 2017 2016 2015 2014 2013 2012
Select a faculty member below for some of their most recent publications.
Rupali Datta
- Tiwari M, Krishnamurthy S, Shukla D, Kiiskila J, Jain A, Datta R, Sharma N, Sahi SV (2016) Comparative transcriptome and proteome analysis to reveal the biosynthesis of gold nanoparticles in Arabidopsis. Nature Scientific Reports 6: 21733. DOI: 10.1038/srep21733 Read More
- Pidatala VR, Li K, Sarkar D, Wusirika R, Datta R (2016) Identification of biochemical pathways associated with lead tolerance and detoxification in Chrysopogon zizanioides L. Nash (vetiver) by metabolic profiling. Environ. Sci. Technol. 50 (5): 2530–2537 38, 868‐877. Read More
- Dhawi F, Datta R, Wusirika R (2016) Mycorrhiza and heavy metal resistant bacteria enhance growth, nutrient uptake and alter metabolic profile of sorghum grown in marginal soil. Chemosphere 157: 33–41 Read More
- Kiiskila JD, Das P, Sarkar D, Datta R (2015) Phytoremediation of Explosive-Contaminated Soils. Curr. Pollution Rep. 1: 23-34 (INVITED ARTICLE). Read More
- Punamiya P, Sarkar D, Rakshit S, Elzinga EJ, Datta R (2015) Immobilization of tetracyclines in manure and manure-amended soils using aluminum-based drinking water treatment residuals. Environ Sci Pollut Res. 23(4): 3322–3332 Read More
- Dhawi F, Datta R, Wusirika R (2015) Mycorrhiza and PGPB modulate maize biomass, nutrient uptake and metabolic pathways in maize grown in mining-impacted soil. Plant Physiol. Biochem. 97: 390–399. Read More
- Das P, Sarkar D, Makris KC, Datta R (2015) Urea-facilitated uptake and nitroreductase-mediated transformation of 2,4,6-trinitrotoluene in soil using vetiver grass. J. Environ. Chem. Eng. 3 (1): 445–452. Read More
- Li K, Pidatala R, Shaik , Datta R, Wusirika R (2014) Integrated metabolomic and proteomic approaches dissect the effect of metal resistant bacteria on maize biomass and copper uptake, Environ. Sci. Technol. 48: 1184-1193. Read More
- Nagar R, Sarkar D, Makris KC, Datta R (2014) Arsenic bioaccessibility and speciation in the soils amended with organoarsenicals and drinking-water treatment residuals based on a long-term greenhouse study. J. Hydrol. 518 (C): 477–485. Read More
- Rakshit S, Sarkar D, Elzinga EJ, Punamiya P, Datta R (2014) Surface complexation of oxytetracycline by magnetite: Effect of solution properties. Vadose Zone J. 13(2): 147 Read More
- Quazi S, Sarkar D and Datta R (2013) Human health risk from arsenical pesticide contaminated soils: A long-term greenhouse study. J. Hazardous Materials. 262 (15): 1031-1038. Read More
- Punamiya R, Sarkar D, Rakshit S, Datta R (2013) Effectiveness of Al-based Drinking Water Treatment Residual as a Novel Sorbent to Remove Tetracyclines from Aqueous Medium. J Environ Qual. 42(5): 1449-1459. Read More
- Das P, Sarkar R, Makris K, Punamiya P, Datta R (2013) Effectiveness of Urea in Enhancing the Extractability of 2,4,6 Trinitrotoluene from Chemically Variant Soil. Chemosphere: 93(9): 1811-1817. Read More
- Datta R, Das P, Smith S, Punamiya P, Ramanathan DM, Reddy R, Sarkar D (2013) Phytoremediation potential of vetiver grass [Chrysopogon zizanioides (l.)] For tetracycline. International. J. Phyto. 15: 343-351 Read More
John J. Durocher
- Durocher JJ, Guisfredi AJ, Leetun DT, and Carter JR. Comparison of on-ice and off-ice graded exercise testing in collegiate hockey players. Applied Physiology, Nutrition, and Metabolism, 35(1): 35-39, 2010.
- Durocher JJ, Lufkin KJ, King ME and Carter JR. Social technology restriction alters state-anxiety but not autonomic activity in humans. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 301(6): R1773-1778, 2011.
- Schwartz CE, Durocher JJ, and Carter JR. Neurovascular responses to mental stress in prehypertensive humans. Journal of Applied Physiology, 110: 76-82, 2011.
- Durocher JJ, Klein JC and Carter JR. Attenuation of sympathetic baroreflex sensitivity during the onset of acute mental stress in humans. American Journal of Physiology: Heart and Circulatory Physiology, 300(5): H1788-93, 2011.
- Carter JR, Durocher JJ, Larson RA, DellaValla JP, and Yang H. Sympathetic Neural Responses to 24-hour Sleep Deprivation in Humans: Sex Differences. American Journal of Physiology: Heart and Circulatory Physiology, 302: H1991-1997, 2012.
- Gorsuch J, Long, J, Miller K, Primeau K, Rutledge S, Sossong A, and Durocher JJ. The Effect of Squat Depth on Multiarticular Muscle Activation in Collegiate Cross-Country Runners. Journal of Strength and Conditioning Research, 27(9): 2619-25, 2013.
- Yang H, Durocher JJ, Larson RA, and Carter JR. Role of the ovarian cycle on neural cardiovascular control in sleep deprived women. Journal of Applied Physiology, 118: 419-426, 2015.
- Petushek EJ, Cokely ET, Ward P, Durocher JJ, Wallace S, and Myer GD. Injury Risk Prediction Expertise: Assessing ACL-IQ. The American Journal of Sports Medicine 43(7): 1640-7.
- Durocher JJ, Carter JR, Cooke WH, Young AH, and Harwood MH. Cerebral blood flow velocity during combined lower body negative pressure and cognitive stress. Aerospace Medicine and Human Performance 86(8): 688-692.
Michael R. Gretz
- Domozych, D.S.,. Lambiasse, L., Kiemle, S.N.. and Gretz, M.R. 2009. Structure and biochemistry of charophycean cell walls. II. Cell wall development and bipolar growth in the desmid Penium margaritaceum. Asymmetry in a symmetric world. Journal of Phycology (in press)
- Bellinger, B.J., Underwood, G.J.C., Ziegler, S.E. and Gretz, M.R. 2009. The significance of diatom-derived polymers in carbon flow dynamics within estuarine biofilms determined through isotopic enrichment. Aquatic Microbial Ecology (in press).
- Domozych, D.S., Serfis, A., Kiemle, S. and Gretz, M.R. 2007. The structure and biochemistry of charophycean cell walls. I. Pectins of Penium margaritaceum. Protoplasma 230:99-115.
- Kiemle, S.N., Domozych, D.S. and Gretz, M.R. 2007. The exopolymers of desmids: Chemistry, structural analysis and implications in wetland biofilms. Phycologia 46:617-627.
- Domozych, D.S., Elliot, L, Kiemle, S.N. and Gretz, M.R. 2007. Pleurotaenium trabecula, a desmid of wetland biofilms: The extracellular matrix and adhesion mechanisms. Journal of Phycology 43:1022-1038.
- Abdullahi, A.S., Underwood, G.J.C., and Gretz, M.R. 2006. Extracellular matrix assembly in diatoms (Bacillariophyceae). V. Environmental effects on polysaccharide synthesis in the model diatom Phaeodactylum tricornutum. Journal of Phycology 42:363-378.
- Apoya, M.D., Liang, Y., Underwood, G.J.C. and Gretz, M.R. 2006. Movement modalities and responses to environmental changes of the mudflat diatom Cylindrotheca closterium. Journal of Phycology 42:379-390.
Erika I. Hersch-Green
- Bangert, R., Ferrier, S. M., Evans, L., Kennedy, K., Grady, K. C., Hersch-Green, E. I., Allan, G. J., and T. G. Whitham. In Press. The proportion of three foundation plant species and their genotypes influence an arthropod community: restoration implications for the endangered southwestern willow flycatcher. Restoration Ecology.
- Hersch-Green, E. I., H. Myburg, and M. T. Johnson. 2012. Adaptive molecular evolution of a defence gene in sexual but not functionally asexual evening primroses. Journal of Evolutionary Biology 25: 1576-1586.
- S.M. Ferrier, R.K. Bangert, E. I. Hersch-Green, J. K. Bailey, G.J. Allan, and T.G. Whitham. 2012. Unique arthropod communities on different host-plant genotypes results in greater arthropod diversity. Arthropod Plant Interactions 6: 187-195.
- Hersch-Green, E. I, N. Turley, and M. T. J. Johnson. 2011. Community genetics: what have we accomplished and where should we be headed? Phil. Trans. R. Soc. B. 366: 1453-1460.
- Hersch-Green, E.I., and R.C. Cronn. 2009. Tangled trios, or something entirely different? Characterizing a hybrid zone in Castilleja (Orobanchaceae). American Journal of Botany 96(8): 1519-1531.
- Hersch, E.I, and B. A. Roy. 2007. Context-dependant pollinator behavior: an explanation for patterns of hybridization among three species of Indian paintbrush. Evolution 61(1): 111- 124. Cover Photo.
- Hersch, E.I. 2006. Foliar damage to parental plants interacts to influence mating success of Ipomoea purpurea. Ecology 87(8): 2026-2036.
Casey J Huckins
- Marcarelli AM, Coble AA, Meingast KM, Kane ES, Brooks CN, Buffam I, Green SA, Huckins CJ, Toczydlowski D, Stottlemyer R. Early View (2019). Of small streams and Great Lakes: Integrating tributaries to understand the ecology and biogeochemistry of Lake Superior. Journal of the American Water Resources Association. https://doi.org/10.1111/1752-1688.1269.
- Goble*, CW., Auer, NA., Huckins, CJ, Danhoff*, BM., Holtgren, JM. and Ogren, SA. 2018. Fish Distributions and Habitat Associations in Manistee River, Michigan, Tributaries: Implications for Arctic Grayling Restoration. North Am J Fish Manage, 38: 469-486. doi:10.1002/nafm.10049.
- Danhoff*, BM., CJ Huckins, NA. Auer, CW. Goble, SA. Ogren, and JM. Holtgren. 2017. Abiotic Habitat Assessment for Arctic Grayling in a Portion of the Big Manistee River, Michigan. Transactions of the American Fisheries Society 146:645-662.
- Coble AA*, Marcarelli AM, Kane ES, Huckins CJ 2016. Uptake of ammonium and soluble reactive phosphorus in forested streams: influence of dissolved organic matter composition. Biogeochemistry 131:355-372.
- Feringa, M., C. Huckins,W. Mattes, E. Baker, T. Zorn, J. Littlefield, K. Scribner. 2016. "Genetic and phenotypic evidence for splake presence in brook trout and lake trout spawning habitats." Journal of Great Lakes Research 42(3): 738-742. Read More
- Marcarelli AM, Huckins CJ & Eggert SL. 2015. Sand aggradation alters biofilm standing crop and metabolism in a low-gradient Lake Superior tributary. Journal of Great Lakes Research 41: 1052-1059. doi:10.1016/j.jglr.2015.09.004.
- Ogren, S. A. and C. J. Huckins 2015 Culvert replacements: improvement of stream biotic integrity? Restoration Ecology 23(6): 821-828.
- Ogren, S.A., and C.J Huckins. 2015. Awareness of bias in fish indices of biotic integrity improves interpretation of bioassessment. North American Journal of Fisheries Management. (in Press)
- Ogren*, S. and C.J Huckins. 2014. Evaluation of suitability and comparability of stream assessment indices using macroinvertebrate data sets from the Northern Lakes and Forests Ecoregion. Ecological Indicators. Volume 40, May 2014, Pages 117–126
- Mirchi*, A., D.W. Watkins, Jr., C. J Huckins, K. Madani and P. Hjorth. 2014. Water resources management in a homogenizing world: Averting the growth and underinvestment trajectory. Water Resources Research (in press) Read More
- Scribner, K., Huckins, C. J., Baker, E., Kanefsky, J. 2012. Genetic relationships and gene flow between resident and migratory brook trout in the Salmon Trout River. Journal of Great Lakes Research. http://dx.doi.org/10.1016/j.jglr.2011.11.009. 38 (2012) 152–158
- Barkdoll, B.D. and C.J Huckins, 2012. The role of bridge scour in relation to stream restoration, Proceedings of the World Environmental and Water Resources Congress 2012 American Society of Civil Engineers, Reston, VA, (pp. 2546-2555).
- Harless, M. L., Huckins, C. J., Grant, J. B., Pypker, T. G. (2011). "Effects of six chemical deicers on larval wood frogs", Environmental Toxicity and Chemistry, Environmental Toxicology and Chemistry 30(7):1637–1641.
- Van Grinsven, M., Mayer, A. and Huckins, C. (2011), Estimation of Streambed Groundwater Fluxes Associated with Coaster Brook Trout Spawning Habitat. Ground Water. doi: 10.1111/j.1745-6584.2011.00856.x
- Huckins, C. J, .E. A. Baker, K. D. Fausch and J. B. K. Leonard. 2008. Ecology and Life History of Coaster Brook Trout Salvelinus fontinalis and Potential Bottlenecks in Their Rehabilitation. North American Journal of Fish Management. 28:1321–1342.
- Huckins, C. J., and E. A. Baker. 2008. Migrations and Biological Characteristics of Adfluvial Coaster Brook Trout in a South Shore Lake Superior Tributary. Transactions of the American Fisheries Society. 137:1229-1243.
- Webster, C. W., C. J F. Huckins, J. M. Shields. 2008. Spatial Distribution of Riparian Zone Coarse Woody Debris in a Managed Northern Temperate Watershed. American Midland Naturalist. in press.
- VanDusen, P. J., C. J Huckins, D. J. Flaspohler. 2005. Associations among selection logging history, brook trout, macroinvertebrates and habitat in Northern Michigan headwater streams. Transactions of the American Fisheries Society. 134:762-774.
- Osenberg, C. W., C. J F. Huckins, A. Kaltenberg, and A. Martinez. 2004. Resolving within and between population variation in feeding ecology with a biomechanical model of crushing force. Oecologia. 141:57-65
- Flaspohler, D. J., C. J F. Huckins, B. R. Bub, and P. J. VanDusen. 2002. Temporal patterns in aquatic and avian communities following selective logging. Forest Science 48:339-350.
- Klinger, R.C., R.F. Floyd, V.S. Blazer, and C.J Huckins. 2001. Nutritional disease of a Lake Victorian cichlid, haplochromis (Prognathrochromis perrieri); a clinical assessment. Journal of Aquariculture and Aquatic Sciences 9:228-236.
- Huckins, C. J F., C. W. Osenberg, and G. G. Mittelbach. 2000. Species introductions and ecological consequences: an example with congeneric sunfish. Ecological Applications 10:612:625.
- Huckins, C.JF. 1997. Linkages between morphology, feeding performance, diet, and competitive ability of molluscivorous sunfish. Ecology 78:2401-2414.
Chandrashekhar P. Joshi
- Shashank K. Pandey, Nookaraju Akula, Takeshi Fujino, Sivakumar Pattathil, and Chandrashekhar P. Joshi* (2016) Virus Induced Gene Silencing (VIGS) Mediated Functional Characterization of Two Genes Involved in Lignocellulosic Secondary Cell Wall Formation. Plant Cell Reports, 35:2353-2367.
- Puranik Swati, Kavitha S. Kumar, Oliver Gailing and Chandrashekhar P. Joshi* (2014) Modifying plant cell walls for bioenergy production. CAB Reviews 9, 017, pp 1-10.
- Nookaraju Akula, Shashank K. Pandey, Takeshi Fujino, Ju Young Kim, Mi Chung Suh, and Chandrashekhar P. Joshi* (2014) Enhanced Accumulation of Fatty Acids and Triacylglycerols in Transgenic Tobacco Stems for Enhanced Bioenergy Production. Plant Cell Reports 33 (7) 1041-1052.
- Sera Jung, Dae-Seok Lee, Yeon-Ok Kim, Chandrashekhar P. Joshi, and Hyeun-Jong Bae (2013) Improved recombinant cellulase expression in chloroplast of tobacco through promoter engineering and 5′ amplification promoting sequence. Plant Molecular Biology 83: 317–328. Published online in June 2013. DOI 10.1007/s11103-013-0088-2.
- Nookaraju A, Pandey SP, Bae HJ and Joshi CP* (2013) Designing cell walls for better bioenergy production. Molecular Plant 6 (1):8-10. doi: 10.1093/mp/sss111 First published online: October 5, 2012.
- Liu Y, Xu F, Gou J, Al-Haddad J, Telewski FW, Bae HJ and C. P. Joshi* (2012) Importance of Two Consecutive Methionines at the N-terminus of a Cellulose Synthase (PtdCesA8) for Normal Wood Cellulose Synthesis in Transgenic Aspen. Tree Physiology 32(11): 1403-1412 first published online October 17, 2012
- Chandrashekhar P. Joshi*, Shivegowda Thammannagowda, Takeshi Fujino, Jiqing Gou, Utku Avci, Candace H. Haigler, Lisa M. McDonnell, Shawn D. Mansfield, Bemnet Menghesa, Nicholas C. Carpita, Darby Harris, Seth DeBolt and Gary F. Peter (2011) Perturbation of wood cellulose synthesis causes pleiotropic effects in transgenic aspen. Molecular Plant 4(2) 331-345.
- Zhu X, Pattahil S, Mazumdar K, Brehm A, Hahn MG. Dinesh-Kumar SP and C. P. Joshi* (2010) Virus-induced gene silencing offers a functional genomics platform for studying plant cell wall formation. Molecular Plant 3 (5): 818-833.
- Fuyu Xu and Chandrashekhar P. Joshi* (2010) Overexpression of Aspen Sucrose Synthase Gene Promotes Growth and Development of Transgenic Arabidopsis Plants. Advances in Biosciences and Biotechnology 1: 426-438.
- Manoj Kumar, Shivegowda Thammannagowda, Vincent Bulone, Vincent Chiang, Kyung-Hwan Han, Chandrashekhar P. Joshi, Shawn D. Mansfield, Ewa Mellerowicz, Björn Sundberg, Tuula Teeri, and Brian E. Ellis. An update on the nomenclature for the cellulose synthases genes from Populus. Trends in Plant Science 14(5):248-254, 2009.
- Shanfa Lu, Laigeng Li, Xiaoping Yi, Chandrashekhar P. Joshi, and Vincent L. Chiang: Differential expression of three eucalyptus secondary cell wall- related cellulose synthase genes in response to tension stress. Journal of Experimental Botany 59: 681-695, 2008.
- (Invited presentation) C.P. Joshi: Genetic engineering of poplars for biofuel production via altered synthesis of cellulose. Presented at Tree Biotechnology meeting at Whistler, BC, Canada during June 28-July 2, 2009.
- C. P. Joshi, Brunner A, Busov V, Meilan R, Thammanagowda S, Tsai C.: Poplars. In: Compendium of transgenic crop plants: Transgenic forest tree species. C. Kole and T. Hall (Eds). Wiley-Blackwell Publishing, Oxford, UK. PP 1-34. 2008.
- C.P. Joshi* and S.D. Mansfield: The cellulose paradox: simple molecule, complex biosynthesis. Current Opinion in Plant Biology. 10: 220-226, 2007.
Charles Kerfoot
- Kerfoot, W.C.; Hobmeier, M.M.; Green, S.A.; Yousef, F.; Brooks, C.N.; Shuchman, R.; Sayers, M.; Lin, L.; Luong, P.; Hayter, E.; Reif, M. Coastal Ecosystem Investigations with LiDAR (Light Detection and Ranging) and Bottom Reflectance: Lake Superior Reef Threatened by Migrating Tailings. Remote Sens. 2019, 11, 1076. https://doi.org/10.3390/rs11091076
- Kerfoot, W.C., N.R. Urban, C.P. McDonald, H. Zhang, R. Rossmann, J. Perlinger, T. Khan, A. Hendricks, M. Priyadarshini, M. Bolstad, 2018, Mining Legacy Across a Wetland Landscape: High Mercury in Upper Peninsula (Michigan) Rivers, Lakes, And Fish. Environ. Sci. Processes Impacts. 20: 708-733. http://dx.doi.org/10.1039/C7EM00521K ESPI Best Paper Nominees collection http://rsc.li/espi-nominees
- Kerfoot, W.C., N.R. Urban, C.P. McDonald, H. Zhang, R. Rossmann, J. Perlinger, T. Khan, A. Hendricks, M. Priyadarshini, M. Bolstad, 2018, Mining Legacy Across a Wetland Landscape: High Mercury in Upper Peninsula (Michigan) Rivers, Lakes, And Fish. Environ. Sci. Processes Impacts. 20: 708-733. http://dx.doi.org/10.1039/C7EM00521K
- Staples, D.F., Maki, R.P., Hirsch, J.K., Kerfoot, W.C., LeDuc, J.F., Burri, T., Moraska Lafrancois, B. Glase, J. 2017. Decrease in young-of-the-year yellow perch growth rates following Bythotrephes longimanus invasion. Biol. Invasions. 19: 2197-2205 http://dx.doi.org/10.1007/s10530-017-1431-3
- Kerfoot, W.C., M.M. Hobmeier, F. Yousef. B. Moraska LaFrancois, R.P. Maki, J.K. Hirsch. 2016. A Plague of Waterfleas (Bythotrephes): Impacts on Microcrustacean Community Structure, Seasonal Biomass, and Secondary Production in a Large Inland-lake Complex. Biol. Invasions. 18 (4): 1121-1145 http://dx.doi.org/10.1007/s10530-015-1050-9
- Kerfoot, W.C., N.R. Urban C.P. McDonald, R. Rossmann, H. Zhang 2016. Legacy mercury releases during copper mining near Lake Superior. J. Great Lakes Res. 42(1): 50-61 http://dx.doi.org/10.1016/j.jglr.2015.10.007
- Kerfoot, W.C. and Savage, S.C. 2016. Multiple inducers in aquatic foodwebs: Counter-measures and vulnerability to exotics. Limnol. Oceanogr., 61: 382–406. 12 Nov 2015 http://dx.doi.org/10.1002/lno.10223
- Rowe, MD., D.R. Obenour, T.F. Nalepa, H.A. Vanderploeg, F. Yousef, W.C. Kerfoot. 2015. Mapping the spatial distribution of invasive dreissenid mussels on the winter-spring phytoplankton bloom in Lake Michigan. Freshwater Biology 60: 2197-2454, 6 Aug 2015 http://dx.doi.org/10.1111/fwb.12653
- Kerfoot, W.C., M.M. Hobmeier, F. Yousef, S.A. Green, R. Regis, C.N. Brooks, R. Shuchman, J. Anderson, and M. Reif. 2014. Light Detection and Ranging (LiDAR) and Multispectral Scanner Studies (MSS) Examine Coastal Environments Influenced by Mining. ISPRS Int. J. Geo-Inf 3: 66-95 http://dx.doi.org/10.3390/ijgi3010066
- Yousef, F., W.C. Kerfoot, R. Shuchman, and G. Fahnenstiel. 2014. Bio-optical properties and primary production of Lake Michigan: insights from 13-years of SeaWiFS imagery. J. Great Lakes Res. 40: 317-324 http://dx.doi.org/10.1016/j.jglr.2014.02.018
- Yousef, F., W.C. Kerfoot, C.N. Brooks, R. Shuchman, B. Sabol, and M. Graves. 2013. Using LiDAR to reconstruct the history of a coastal environment influenced by legacy mining. J. Great Lakes Res. 39 Sup. 1: 205-216 http://dx.doi.org/10.1016/j.jglr.2013.01.003
- Kerfoot, W.C., F. Yousef, S.A. Green, R. Regis, R. Shuchman, C.N. Brooks, M. Sayers, B. Sabol, M. Graves. 2012. Light Detection and Ranging (LiDAR) and Multispectral Studies of Disturbed Lake Superior Coastal Environments. Limnol. Oceanogr. 57(3): 749-771 http://dx.doi.org/10.4319/lo.2012.57.3.0749
- Kerfoot, W.C., F. Yousef, M. Hobmeier, R.P. Maki, S.T. Jarnagin, J.H. Churchill. 2011. Temperature, Recreational Fishing and Diapause Egg Connections: Dispersal of Spiny Water Fleas (Bythotrephes longimanus) Biol. Invasions. 13: 2513-2531 http://dx.doi.org/10.1007/s10530-011-0078-8
- Cooke, C.A., P.H. Balcom, W.C. Kerfoot, M.B. Abbott, A.P. Wolfe. 2011. Pre-Columbian Mercury Pollution with the Smelting of Argentiferous Ores in the Bolivian Andes. AMBIO 40: 18-25 http://dx.doi.org/10.1007/s13280-010-0086-4
- Kerfoot, W.C., F. Yousef, S.A. Green, J.W. Budd, D.J. Schwab, and H.A. Vanderploeg. 2010. Approaching storm: Disappearing winter bloom in Lake Michigan. J. Great Lakes Res. 36: Supplement 3: 30-41 https://doi.org/10.1016/j.jglr.2010.04.010
- Kerfoot, W.C. and A.S. McNaught. 2010. ‘Two-step’ dialogue between the cladoceran Bosmina and invertebrate predators: Induction and natural selection. Limnol. Oceanogr. 55(1) 403-419 https://doi.org/10.4319/lo.2010.55.1.0403
- Berendonk, T.U., K. Spitze, W.C. Kerfoot. 2009. Ephemeral metapopulations show high genetic diversity at regional scales. Ecology. 90(10): 2670-2675 https://doi.org/10.1890/08-0667.1
- Kerfoot, W.C., J.W. Budd, S.A. Green, J.B. Cotner, B.A. Biddanda, D.J. Schwab and H.A. Vanderploeg 2008. Doughnut in the desert: late-winter production pulse in southern Lake Michigan. Limnol. Oceanogr 53: 589-604 https://doi.org/10.4319/lo.2008.53.2.0589
Amy M Marcarelli
- Bump JK, Bergman BG, Schrank AJ, Marcarelli AM, Kane ES, Risch AC, Schutz M. 2017. Nutrient release from moose bioturbation in aquatic ecosystems. Oikos 126:389-397. Read More
- Dodds WK, Burgin AJ, Marcarelli AM, Strauss EA. 2017. Nitrogen Transformations. Pp 173-196 in: Lamberti GA, Hauer FR (eds) Methods in Stream Ecology Volume 2: Ecosystem Function, 3rd Edition. Elsevier. Read More
- Olson JC, Marcarelli AM, Timm AL, Eggert SL, Kolka RK. 2017. Evaluating the effects of culvert designs on ecosystem processes in northern Wisconsin streams. River Research and Applications 33:777–787. Read More
- Baker MA, Arp CD, Goodman KJ, Marcarelli AM, Wurtsbaugh WA. 2016. Stream-lake interaction: understanding a coupled hydro-ecological system. Pp 321-348 in: Jones JB, Stanley EH (eds) Stream Ecosystems in a Changing Environment. Academic Press. Read More
- Coble AA, Marcarelli AM, Kane ES, Huckins CJ. 2016. Uptake of ammonium and soluble reactive phosphorus in forested streams: influence of dissolved organic matter composition. Biogeochemistry 131:355–372. Read More
- Coble AA, Marcarelli AM, Kane ES, Stottlemyer JR, Toczydlowski D. 2016. Temporal patterns of dissolved organic matter biodegradability are similar across three rivers of varying size. Journal of Geophysical Research - Biogeosciences 121:1617-1631 Read More
- Collins SF, Baxter CV, Marcarelli AM & Wipfli MS. 2016. Effects of experimentally added salmon subsidies on resident fishes via direct and indirect pathways. Ecosphere 7:e01248. Read More
- Veverica TJ, Kane ES, Marcarelli AM, Green SA. 2016. Ionic liquid extraction unveils previously occluded humic-bound iron in peat pore water. Soil Science Society of America Journal 80:771-782. Read More
- Marcarelli AM, Huckins CJ, Eggert SL. 2015. Sand aggradation alters biofilm standing crop and metabolism in a low-gradient Lake Superior tributary. Journal of Great Lakes Research 41:1052-1059. Read More
- Coble AA, Marcarelli AM & Kane ES. 2015. Ammonium and glucose amendments stimulate dissolved organic matter mineralization in a Lake Superior tributary. Journal of Great Lakes Research 41:801-807. Read More
- Collins SF, Marcarelli AM, Baxter CV & Wipfli MS. 2015. A critical assessment of the ecological assumptions underpinning compensatory mitigation of salmon-derived nutrients. Environmental Management 56:571-586. Read More
Guiliang Tang
- Peng T, Qiao M, Liu H, Teotia S, Zhang Z, Zhao Y, Wang B, Zhao D, Shi L, Zhang C, Le B, Rogers K, Gunasekara C, Duan H, Gu Y, Tian L, Nie J, Qi J, Meng F, Huang L, Chen Q, Wang Z, Tang J, Tang X, Wei H, Chen X, Zhao Q, Tang G. (2018) A Resource for Inactivation of microRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants. Mol Plant. 11(11): 1400-1417.
- Ya‐Fan Zhao, Ting Peng, Hong‐Zheng Sun, Sachin Teotia, Hui‐Li Wen, Yan‐Xiu Du, Jing Zhang, Jun‐Zhou Li, Gui-liang Tang, Hong‐Wei Xue, Quan‐Zhi Zhao. (2018) miR1432‐OsACOT (Acyl‐CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice. Plant biotechnology journal doi: 10.1111/pbi.13009. [Epub ahead of print]
- Lei Tian, Haiping Liu, Ligang Ren, Lixia Ku, Liuji Wu, Mingna Li, Shunxi Wang, Jinlong Zhou, Xiaoheng Song, Jun Zhang, Dandan Dou, Huafeng Liu, Guiliang Tang, Yanhui Chen. (2018) MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition. BMC plant biology 18 (1), 290.
- Chao Song, Xiao-Huang Qin, Qiao Zhou, Zi-Yang Wang, Wei-He Liu, Jun Li, Lan Huang, Yang Chen, Guiliang Tang, Dong-Jie Zhao, Zhong-Yi Wang. (2018) PlantES: A Plant Electrophysiological Multi-Source Data Online Analysis and Sharing Platform. Applied Sciences 8 (11), 2269.
- Wang Y, Shi C, Yang T, Zhao L, Chen J, Zhang N, Ren Y, Tang G, Cui D, Chen F. (2018) High-throughput sequencing revealed that microRNAs were involved in the development of superior and inferior grains in bread wheat. Sci Rep. 14;8(1): 13854.
- Yang, T., Wang, Y., Teotia, S., Zhang, Z., & Tang, G. (2018). The making of leaves: how small RNA networks modulate leaf development. Frontiers in plant science, 9, 824. Read More
- Liu, H., Yu, H., Tang, G., & Huang, T. (2018). Small but powerful: function of microRNAs in plant development. Plant cell reports, 1-14. Ream More
- Zhao, Y., Wen, H., Teotia, S., Du, Y., Zhang, J., Li, J., ... & Zhao, Q. (2017). Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.). BMC plant biology, 17(1), 215. Read More
- Teotia, S., Zhang, D., & Tang, G. (2017). Knockdown of Rice microRNA166 by Short Tandem Target Mimic (STTM). In Functional Genomics (pp. 337-349). Humana Press, New York, NY. Read More
- Tian, B., Wang, S., Todd, T. C., Johnson, C. D., Tang, G., & Trick, H. N. (2017). Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing. BMC genomics, 18(1), 572. Read More
- Teotia, S., & Tang, G. (2017). Silencing of Stress-Regulated miRNAs in Plants by Short Tandem Target Mimic (STTM) Approach. In Plant Stress Tolerance (pp. 337-348). Humana Press, New York, NY. Read More
- Yang M, Li C, Cai Z, Hu Y, Nolan T, Yu F, Yin Y, Xie Q, Tang G, Wang X. (2017) SINAT E3 Ligases Control the Light-Mediated Stability of the Brassinosteroid-Activated Transcription Factor BES1 in Arabidopsis. Dev Cell . 41(1): 47-58. DOI:10.1016/j.devcel.2017.03.014. Read More
- Zhang Z, Hu F, Sung MW, Shu C, Castillo-González C, Koiwa H, Tang G, Dickman M, Li P, Zhang X (2017) RISC-Interacting Clearing 3'- 5' Exoribonucleases (RICEs) degrade uridylated cleavage fragments to maintain functional RISC in Arabidopsis. Elife DOI:10.7554/eLife.24466. Read More
- Zhang H, Zhang J, Yan J, Gou F, Mao Y, Tang G, Botella JR, Jian-Kang Zhu (2017) Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits. Proc Natl Acad Sci U S A. DOI:10.1073/pnas.1703752114. Read More
- Wanzhen LI, Yulong WANG, Jianyu ZHU, Zhangxun WANG, Guiliang TANG, Bo HUANG (2017)Differential DNA methylation may contribute to temporal and spatial regulation of gene expression and the development of mycelia and conidia in entomopathogenic fungus Metarhizium robertsii. Fungal Biology (Online) Read More
- Jun Yan, Chunzhao Zhao, Jianping Zhou, Yu Yang, Pengcheng Wang, Xiaohong Zhu, Guiliang Tang, Ray A. Bressan, Jian-Kang Zhu (2016) The miR165/166 Mediated Regulatory Module Plays Critical Roles in ABA Homeostasis and Response in Arabidopsis thaliana. Plos Genetics DOI:10.1371/journal.pgen.1006416. Read More
- Yang Chen, Dong-Jie Zhao, Zi-Yang Wang, Zhong-Yi Wang, Guiliang Tang, and Lan Huang (2016) Plant Electrical Signal Classification Based on Waveform Similarity. Algorithms 9(4), 70. Read More
- Lina Shi, Xiaoqing Tang, Guiliang Tang (2016) GUIDE-seq to Detect Genome-wide Double-Stranded Breaks in Plants. Trends in Plant Science 21(10): 815-818. Read More
- Sachin Teotia, Deepali Singh, Xiaoqing Tang, Guiliang Tang (2016) Essential RNA-Based Technologies and Their Applications in Plant Functional Genomics. Trends in Biotechnology. 34(2):106-23. Read More
- Wu X, Ding D, Shi C, Xue Y, Zhang Z, Tang G, Tang J. (2016) microRNA-dependent gene regulatory networks in maize leaf senescence. BMC Plant Biol. 16:73. doi: 10.1186/s12870-016-0755-y. Read More
- Wang X, Chen L, Jin H, Wang S, Zhang Y, Tang X, Tang G (2016) Screening miRNAs for early diagnosis of colorectal cancer by small RNA deep sequencing and evaluation in a Chinese patient population. OncoTargets and Therapy. 9: 1159-1166. Read More
- Zhang Z, Wu X, Shi C, Wang R, Li S, Wang Z, Liu Z, Xue Y, Tang G, Tang J. (2016) Genetic dissection of the maize kernel development process via conditional QTL mapping for three developing kernel-related traits in an immortalized F2 population. Mol Genet Genomics. 291(1):437-54. Read More
- Chi M, Bhagwat B, Tang G, Xiang Y. (2016) Knockdown of Polyphenol Oxidase Gene Expression in Potato (Solanum tuberosum L.) with Artificial MicroRNAs. Methods Mol Biol. 1405:163-78. Read More
- Bhagwat B, Chi M, Han D, Tang H, Tang G, Xiang Y. (2016) Design, Construction, and Validation of Artificial MicroRNA Vectors Using Agrobacterium-Mediated Transient Expression System. Methods Mol Biol. 1405:149-62. Read More
- Sachin Teotia and Guiliang Tang (2015) To bloom or not to bloom: Role of microRNAs in plant flowering. Molecular Plant 8(3): 359-377 (Highly Cited) Read More
- Xiaoyun Jia, Na Ding, Weixin Fan, Jun Yan, Yiyou Gu, Xiaoqing Tang, Runzhi Li, Guiliang Tang (2015) Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Science, 233: 11-21. Read More
- Zhenying Cai, Jingjing Liu, Haijiao Wang, Cangjing Yang, Yuxiao Chen, Yongchi Li, Shanjin Pan, Rui Dong, Guiliang Tang, Juan de Dios Barajas-Lopez, Hiroaki Fujii, and Xuelu Wang (2014) GSK3-like kinases positively modulate abscisic acid signaling through phosphorylating subgroup III SnRK2s in Arabidopsis. Proc Natl Acad Sci U S A. 111(26): 9651-6 Read More
- Peng T, Sun H, Qiao M, Zhao Y, Du Y, Zhang J, Li J, Tang G, Zhao Q. (2014) Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice. BMC Plant Biol. 2014 Jul 23;14(1):196. Read More
- James Wong, Lei Gao, Yang Yang, Jixian Zhai, Siwaret Arikit, Yu Yu, Shuyi Duan, Vicky Chan, Qin Xiong, Jun Yan, Shengben Li, Renyi Liu, Yuanchao Wang, Guiliang Tang, Blake C. Meyers, Xuemei Chen and Wenbo Ma (2014) Roles of Small RNAs in Soybean Defense against Phytophthora sojae Infection. Plant J. 2014 Jun 18. doi: 10.1111/tpj.12590. [Epub ahead of print] Read More
- Chi M, Bhagwat B, Lane WD, Tang G, Su Y, Sun R, Oomah BD, Wiersma PA, Xiang Y. (2014) Reduced polyphenol oxidase gene expression and enzymatic browning in potato (Solanum tuberosum L.) with artificial microRNAs. BMC Plant Biol. 11;14(1):62. Read More
- Tang G and Tang X. (2013) Short Tandem Target Mimic: A Long Journey to the Engineered Molecular Landmine for Selective Destruction/Blockage of microRNAs in Plants and Animals. Journal of Genetics and Genomics. 40 (6): 291–296. Read More
- Bhagwata B, Chia M, Su L, Tang H, Tang G., Xiang Y. (2013) An in vivo Transient Expression System Can Be Applied for Rapid and Effective Selection of Artificial microRNA Constructs for Plant Stable Genetic Transformation. Journal of Genetics and Genomics. 40(5): 261-70. Read More
- Tang G*, Yan J, Gu Y, Qiao M, Fan R, Mao Y, Tang X*. (2012) Construction of short tandem target mimic (STTM) to block the functions of plant and animal microRNAs. Methods 58(2):118-25.(*Corresponding authors) Read More
- Yan J, Gu Y, Jia X, Kang W, Pan S, Tang X, Chen X, Tang G. (2012) Effective small RNA destruction by the expression of a short tandem target mimic in Arabidopsis. Plant Cell. 24(2):415-27. (Highly Cited) Read More
- Lewis RW, Tang G, McNear DH Jr. (2012) Morphological and genetic changes induced by excess Zn in roots of Medicago truncatula A17 and a Zn accumulating mutant. BMC Res Notes. 5(1):657 Read More
- Ren L. and Tang G. (2012) Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Science, 187: 59-68 Read More
- Dianwei Han, Jun Zhang, and Guiliang Tang (2012) MicroRNAfold: pre-microRNA secondary structure prediction based on Modified NCM model with thermodynamics-based scoring strategy. International Journal of Data Mining and Bioinformatics 6(3):272-91 Read More
- Iyer NJ, Jia X, Sunkar R, Tang G, Mahalingam R. (2012) microRNAs responsive to ozone-induced oxidative stress in Arabidopsis thaliana. Plant Signal Behav 7(4):484 - 491. Read More
- Lijuan Ji, Xigang Liu, Jun Yan, Wenming Wang, Rae Eden Yumul, Yu Ju Kim, Thanh Theresa Dinh, Jun Liu, Xia Cui, Binglian Zheng, Manu Agarwal, Chunyan Liu, Xiaofeng Cao, Guiliang Tang, and Xuemei Chen* (2011) ARGONAUTE10 and ARGONAUTE1 Regulate the Termination of Floral Stem Cells through Two microRNAs in Arabidopsis. PLoS Genet. 7(3):e1001358. Epub 2011 Mar 31. Read More
- Xiaoyun Jia, Jun Yan, and Guiliang Tang (2011) MicroRNA-mediated DNA methylation in plants. Frontiers in Biology 6(2):133-139 Read More
- Tang X, Tang X, Gal J, Kyprianou N, Zhu H, Tang G. (2011) Detection of microRNAs in prostate cancer cells by microRNA array. Methods Mol Biol. 732:69-88. Read More
- Dianwei Han, Guiliang Tang, and Jun Zhang (2011) A Parallel Strategy for Predicting the Secondary Structure of Polycistronic MicroRNAs. Int. J. Bioinformatics Research and Applications (In press)
- Guiliang Tang (2010) Plant microRNAs: An insight into their gene structures and evolution. Seminars in Cell and Developmental Biology 21:782-789. Read More
- Wang WX, Wilfred BR, Madathil SK, Tang G, Hu Y, Dimayuga J, Stromberg AJ, Huang Q, Saatman KE, Nelson PT (2010) MiR-107 Regulates Granulin/Progranulin with Implications for Traumatic Brain Injury and Neurodegenerative Disease. Am J Pathol. 177(1):334-45 Read More
Xiaohu (Mark) Tang
- Cystine addiction of triple negative breast cancer associated with EMT augmented death signaling. Tang X, Ding CK, Wu J, Sjol J, Wardell S, George D, Donald P. McDonnell DP, Hsu DS, Chang JT, Chi JT. Oncogene, 2016 Nov 21.
- Cystine deprivation triggers programmed necrosis in VHL-deficient renal cell carcinomas. Tang X, Wu J, Ding CK, Lu M, Keenan MM, Lin CC, Lin CA, Wang CC, George D, Hsu, DS, Chi JT. Cancer Research, 2016 Apr 1;76(7):1892-903
- ACLY and ACC1 Regulate Hypoxia-Induced Apoptosis by Modulating ETV4 via α-ketoglutarate. Keenan MM, Liu B, Tang X, Wu J, Cyr D, Stevens RD, Ilkayeva O, Huang Z, Tollini LA, Murphy SK, Lucas J, Muoio DM, Kim SY, Chi JT. PLoS Genet. 2015 Oct 9; 11(10)
- Comprehensive profiling of amino acid response uncovers unique methionine-deprived response dependent on intact creatine biosynthesis. Tang X, Keenan MM, Wu J, Lin CA, Dubois L, Thompson JW, Freedland SJ, Murphy SK, Chi JT. PLoS Genet. 2015 Apr 7; 11(4)
- A joint analysis of metabolomics and genetics of breast cancer. Tang X, Lin CC, Spasojevic I, Iversen ES, Chi JT, Marks JR. Breast Cancer Res. 2014 Aug 5;16(4):415
- Acidosis induces reprogramming of cellular metabolism to mitigate oxidative stress. LaMonte GM, Tang X, Chen LY, Wu J, Ding CK, Keenan MM, Sangokoya C, Kung HN, Ilkayeva O, Boros LG, Newgard CB and Chi JT. Cancer & Metabolism. 2013 Dec 23;1(1):23
- Functional interaction between responses to lactic acidosis and hypoxia regulates genomic transcriptional outputs. Tang X, Joseph Lucas JE, Ling-Yu J. Chen JL, LaMonte G, Wu J, Wang MC, Costantinos Koumenis Chi JT. Cancer Research. 2012 Jan 15;72 (2):491-502
- A high-throughput screening method for small molecule inhibitors of the aberrant mutant SOD1 and Dynein interaction. Tang X, Seyb KI, Huang M, Schuman ER, Shi P, Zhu Z, Glicksman MA. Journal of Biomolecular Screen, 2012 Mar; 17(3): 314-26
Xiaoqing Tang
- Sachin Teotia, Deepali Singh, Xiaoqing Tang, Guiliang Tang (2016) Essential RNA-Based Technologies and Their Applications in Plant Functional Genomics. Trends in Biotechnology 34 (2): 106-23. Read More
- Wang X, Chen L, Jin H, Wang S, Zhang Y, Tang X, Tang G (2016) Screening miRNAs for early diagnosis of colorectal cancer by small RNA deep sequencing and evaluation in a Chinese patient population. OncoTargets and Therapy. 9: 1159-1166. Read More
- Mohan R, Mao Y, Zhang S, Zhang YW, Xu CR, Gradwohl G, Tang X. (2015) Differentially Expressed MicroRNA-483 Confers Distinct Functions in Pancreatic β- and α-Cells. J Biol Chem. 290(32):19955-66. Read More
- Xiaoyun Jia, Na Ding, Weixin Fan, Jun Yan, Yiyou Gu, Xiaoqing Tang, Runzhi Li, Guiliang Tang (2015) Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Science, 233: 11-21. Read More
- Mao Y, Mohan R, Zhang S, Tang X. (2013) MicroRNAs as pharmacological targets in diabetes. Pharmacol Res. (In press. doi:pii: S1043-6618(13)00102-3. 10.1016/j.phrs.2013.06.005.) Read More
- Tang G* and Tang X*. (2013) Short Tandem Target Mimic: A Long Journey to the Engineered Molecular Landmine for Selective Destruction/Blockage of microRNAs in Plants and Animals. Journal of Genetics and Genomics. 40 (6): 291–296. Read More
- Tang G*, Yan J, Gu Y, Qiao M, Fan R, Mao Y, Tang X*. (2012) Construction of short tandem target mimic (STTM) to block the functions of plant and animal microRNAs. Methods (in press, *Corresponding authors) Read More
- Zhao X, Mohan R, Ozcan S, Tang X. (2012) MicroRNA-30d Induces Insulin Transcription Factor MafA and Insulin Production by Targeting Mitogen-activated Protein 4 Kinase 4 (MAP4K4) in Pancreatic β-Cells. J Biol Chem. 287(37):31155-64. Read More
- Tang, X., Muniappan, L., Tang, G., and Ozcan, S. (2009) Identification of glucose-regulated miRNAs from pancreatic beta cells reveals a role for miR-30d in insulin transcription. RNA 15:287-293.
- Tang, X.*, Tang, G., and Özcan S*. (2008) Role of microRNAs in diabetes. BBA-Gene Regulatory Mechanisms. 1779: 697-701 (* Corresponding authors).
- Tang, G., Tang, X., Mendu, V., Tang, XH., and Jia, X. (2008) The art of microRNA: Various strategies leading to gene silencing via an ancient pathway. BBA-Gene Regulatory Mechanisms. 1779: 655-662.
- Tang, G., Xiang, Y., Kang, Z., Mendu, V., Tang, X., Jia, X., and Tang, X. (2008) Small RNA technologies: siRNA, miRNA, antagomiR, target mimicry, miRNA sponge and miRNA profiling. Current Perspectives in MicroRNAs (miRNA), Springer Netherlands, pp 17-33.
- Tang, X., Gal J., Zhang X., Zhu H. and Tang G. (2007) A simple array platform for microRNA analysis and its application in mouse tissues. RNA 13,1803-22.
- Tang, X., Guilherme A, Chakladar A, Powelka AM, Konda S, Virbasius JV, Nicoloro SM, Straubhaar J, Czech MP. (2006) An RNA interference-based screen identifies MAP4K4/NIK as a negative regulator of PPAR gamma, adipogenesis, and insulin-responsive hexose transport. Proc Natl Acad Sci U S A. 103, 2087-2092.
- Powelka, A.M., Seth, A., Virbasius, J.V., Kiskinis, E., Nicoloro, S.M., Guilherme, A., Tang, X., Straubhaar, J., Cherniack, A.D., Parker, M.G., Czech, M.P. (2006) Suppression of oxidative metabolism and mitochondrial biogenesis by the transcriptional corepressor RIP140 in mouse adipocytes. J Clin Invest. 116,125-136.
- Tang, X., Powelka, A.M., Soriano, N.A., Czech, M.P. and Guilherme A. (2005) PTEN, but not SHIP2, suppresses insulin signaling through the phosphatidylinositol 3-kinase/Akt pathway in 3T3-L1 Adipocytes. J Biol Chem. 280,22523-22529.
- Zhou, Q.L., Park, J.G., Jiang, Z.Y., Holik, J.J., Mitra, P., Semiz, S., Guilherme, A., Powelka, A.M., Tang, X., Virbasius, J., Czech, M.P. (2004) Analysis of insulin signaling by RNAi-based gene silencing. Biochem Soc Trans. 32(Pt 5), 817-821.
Stephen Techtmann
- Brewer, S.S.; Techtmann, S.M.; Mahmoudi, N.; Niang, D.; Pfiffner, S.M.; Hazen, T.C. Co-extraction of DNA and PLFA from soil samples Journal of Microbiological Methods, Volume 115, August 2015, Pages 64-66, ISSN 0167-7012
- Smith, M.B; Rocha. A.M.; Oleson, S.W.; Paradis, C.; Smillie, C.S.; Campbell. J.H.; Fortney, J.L.; Mehlhorn, T.L.; Lowe. K.A.; Earles, J.E.; Phillips, J.; Techtmann, S.M.; Joyner, D.C.; Preheim, S.P.; Sanders, M.S.; Mueller, M.A; Brooks, S.; Watson, D.B.; Wu, L; Zhang, P.; He, Z.; Zhou, J.; Adams, M.W.W.; Lancaster, A.; Poole, F.; Adams, P.D.; Arkin, A.P.; Fields, M.; Alm, E.J.; Hazen, T.C. (2015) Natural bacterial communities as quantitative biosensors. 6.3 (2015): e00326-15.
- Techtmann, S.M.; Fortney, J.L; Ayers, K.A.; Linley, T.D.; Pfiffner, S.M.; Hazen, T.C. (2015) The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth. PLoS ONE 10(3): e0120605. doi:10.1371/journal.pone.0120605
- Mahmoudi, N.; Robeson, M.S.; Castro, H.; Fortney, J.L.; Techtmann, S.M.; Joyner, D.C.; Paradis, C.; Pffiner, S.M.; Hazen, T.C. (2015) Microbial community composition and diversity in Caspian Sea sediments. FEMS Microbial Ecology Dec 2014 DOI: 10.1093/femsec/fiu013
- Hazen, T.C.; Rocha, A.M.; Techtmann S.M. (2013) Advances in monitoring environmental microbes. Current Opinions in Biotechnology 24 (3), 526-533.
- Sambuughin, N; Swietnicki, W; Techtmann, S.; Matrosova, V; Wallace, T; Goldfarb, L; Maynard, E. (2012) KBTBD13 Interacts with Cullin 3 to form a functional Ubiquitin Ligase Biochem Biophys Res Commun 421(4):743-9
- Techtmann, S.M.; Lebedinsky, A.V.; Colman, A.S.; Sokolova, T.G.; Woyke, T.; Goodwin, L; Robb, F.T. (2012) Evidence for Horizontal Gene Transfer of Anaerobic Carbon Monoxide Dehydrogenases. Front. Microbio. - Evolutionary and Genomic Microbiology 3:132
- Techtmann, S.M.; Ghirlando, R.; Kao, S.; Strebel, K; Maynard, E. (2012) Hydrodynamic and Functional Analysis of HIV-1 Vif Oligomerization, Biochemistry. 2012 Feb 27.
- Techtmann S.M., Colman A.S., Murphy M.B., Schackwitz W., Goodwin L., Robb F.T. (2011) Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria. Front. Microbio. - Evolutionary and Genomic Microbiology 2: 147 Epub 2011 Jul 11
- Techtmann S.M., Robb, F.T. (2010) Archaeal-like Chaperonins in Bacteria. Proc Natl Acad Sci U S A. 107(47):20269-74. Epub 2010 Nov 5.
- Techtmann, S.M., Colman, A.S., Robb, F.T. (2009) “That Which Does Not Kill Us Only Makes Us Stronger”: The Role of Carbon Monoxide in Thermophilic Microbial Consortia, Environmental Microbiology 11(5); 1027 - 1037
Ebenezer Tumban
- Link to PubMed
- Basu R., Zhai L., Contreras A., and Tumban E. (2018). Immunization with Phage Virus-like Particles Displaying Zika Virus B-cell Epitopes Neutralizes Zika Virus Infection of Monkey Kidney Cells. Vaccine, In Press.
- Zhai L., Peabody J., Pang YS., Schiller J., Chackerian B., and Tumban E. (2017). A novel candidate MS2 phage VLP vaccine displaying a tandem HPV L2 peptide offers similar protection in mice to Gardasil-9. Antiviral Research 147:116-123.
- Peabody J., Muttil P., Chackerian B., and Tumban E. (2017). Characterization of a spray-dried candidate HPV L2-VLP vaccine stored for multiple years at room temperature. Papillomavirus Research 3:116-120.
- Basu R., Tumban E. (2016). Zika Virus on a Spreading Spree: what we now know that was unknown in the 1950s. BMC Virology Journal 13(165):1-9
- Zhai L. and Tumban E. (2016). Gardasil-9: A global survey of projected efficacy. Antiviral Research 130:101-109
- Saboo S., Tumban E., Peabody J., Wafula D., Peabody D., Chackerian B., and Muttil P. (2016). Optimized Formulation of a Thermostable Spray-Dried Virus-Like Particle Vaccine against Human Papillomavirus. Molecular Pharmaceutics [Epub ahead of print]
- Tumban E., Muttil P., Escobar C., Peabody J., Wafula D., Peabody D., and Chackerian B. (2015). Preclinical refinements of a broadly protective VLP-based HPV vaccine targeting the minor capsid protein, L2. Vaccine 33(29):3346-53.
- Tyler M., Tumban E., Dziduszko A., Ozbun M., Peabody D., and Chackerian B. (2014). Immunization with a consensus epitope from human papillomavirus L2 induces antibodies that are broadly neutralizing. Vaccine 32(34):4267-74.
- Tyler M., Tumban E., Peabody D., and Chackerian B. (2014). The use of hybrid virus-like particles to enhance the immunogenicity of a broadly protective HPV vaccine. Biotechnology and Bioengineering 111(12):2398-406.
- Tyler M., Tumban E., Chackerian B. (2013). Second-generation prophylactic HPV vaccines: successes and challenges. Expert Review of Vaccines 13(2):247-55.
- Tumban E., Peabody J., Peabody D., and Chackerian B. (2013). A Universal Virus-Like Particle-based Vaccine for Human Papillomavirus: Longevity of Protection and Role of Endogenous and Exogenous Adjuvants. Vaccine 31(41):4647-54.
- Tumban E., Maes N., Schirtzinger E., Young K., Hanson C., Whitehead S., and Hanley K. (2013). Replacement of conserved or variable sequences of the mosquito-borne dengue virus 3′ untranslated region with homologous sequences from Modoc virus does not change infectivity for mosquitoes. Journal of General Virology 94(4):783-8.
- Tumban E., Peabody J., Tyler M., Peabody D., and Chackerian B. (2012). VLPs Displaying a Single L2 epitope Induce Broadly Cross-neutralizing Antibodies Against Human Papillomavirus. PLoS One 7(11).
- Tumban E., Peabody J, Peabody D. and Chackerian B. (2011). A pan-HPV vaccine based on bacteriophage PP7 VLPs displaying broadly cross-neutralizing epitopes from the HPV minor capsid protein, L2. PLoS One 6(8).
- Hunter Z, Tumban E., Dziduszko A., and Chackerian B. (2011). Aerosol delivery of Virus-like particles to the genital tract induces local and systemic antibody responses. Vaccine 29(28):4584-92.
- Tumban E., Maes N., Mitzel D., Hanson C., Whitehead S., and Hanley K. (2011). Replacement of the 3’ untranslated variable region of the mosquito-borne dengue virus with that of tick-borne Langat virus does not alter vector specificity. Journal of General Virology 92(4):841-8.
- Romero T., Tumban E., Jun J., Lott W., and Hanley K. A. (2006). Secondary structure of dengue virus type 4 3' untranslated region: impact of deletion and substitution mutations. Journal of General Virology 87(11):3291-6.
Thomas Werner
- Werner, T., Steenwinkel, T., Jaenike, J. (2017) Drosophilids of the Midwest and Northeast. (Version 2) J. Robert Van Pelt and John and Ruanne Opie Library, Michigan Technological University. Houghton, Michigan. ISBN: 978-1-7326524-0-8 (E-Book, 345 pages) Read More
- Scott Chialvo C. H. and Werner, T. (2018) Drosophila, destroying angels, and deathcaps! Oh my! A review of mycotoxin tolerance in the genus Drosophila. Frontiers in Biology. April 24, 1-12. Read More
- Werner, T. (2017) The Drosophilids of a Pristine Old-Growth Northern Hardwood Forest. The Great Lakes Entomologist, 50 (2), 68-78. (Cover) Read More
- Werner, T. and Jaenike, J. (2017) Drosophilids of the Midwest and Northeast. River Campus Libraries, University of Rochester. Rochester, New York.
- Mitchell, C.M., Latuszek, C.E., Vogel, K.R., Greenlund, I.M., Hobmeier, R.E., Ingram, O.K., Dufek, S.R., Pecore, J.L., Nip, F.R., Johnson, Z.J., Ji, X., Wei, H., Gailing, O., Werner, T. (2017) Alpha-Amanitin Resistance in Drosophila melanogaster: A Genome-Wide Association Approach. PLoS ONE, Feb 27;12(2):e0173162. doi: 10.1371/journal.pone.0173162. Read More
- Zhang, J., Li, C., Dutta, C., Zhang, S., Tiwari, A, Werner, T., Luoc, F-T, Liu, H. (2017) A Novel Near-infrared Fluorescent Probe for Sensitive Detection of β-Galactosidase. Analytica Chimica Acta, 968, 97-104. Read More
- Koshikawa, S., Giorgianni, M.W., Vaccaro, K., Yoder, J.H., Werner, T., Carroll, S.B. (2015) The gain of cis-regulatory activities underlies novel domains of wingless gene expression in Drosophila. Proc Natl Acad Sci USA Published ahead of print doi: 10.1073/pnas.1509022112 Read More
- Mitchell, C.M., Yeager, R.D., Johnson, Z.J., D’Annunzio, S.E., Vogel, K.R., Werner, T. (2015) Long-term resistance of Drosophila melanogaster to the mushroom toxin alpha-amanitin. PLoS ONE May 15 DOI:10.1371/journal.pone.0127569 Read More
- Werner T. (2015) Leopard spots and zebra stripes on fruit fly wings. Nature Education 8(2):3 Read More
- Mitchell, C.M., Saul, M.C., Lei, L., Wei, H., Werner, T. (2014) The Mechanisms Underlying Alpha-Amanitin Resistance in Drosophila melanogaster: A Microarray Analysis. PLoS ONE. Apr 2;9(4):e93489. doi: 10.1371/journal.pone.0093489 Read More
- Bray, M.J., Werner, T., Dyer, K.A. (2014) Two genomic regions together cause dark abdominal pigmentation in Drosophila tenebrosa. Heredity 112, 454-462. (11 December 2013) doi:10.1038/hdy.2013.124 Read More
- Werner T., Koshikawa S., Williams T.M., Carroll S.B. (2010) Generation of a novel wing color pattern by the Wingless morphogen. Nature, Vol. 464, pp. 1143-1148. Read More
- Rebeiz M., Ramos-Womack M., Jeong S., Andolfatto P., Werner T., True J., Stern D.L., Carroll S.B. (2009) Evolution of the tan Locus Contributed to Pigment Loss in Drosophila santomea: A Response to Matute et al. Cell, Vol. 139, pp. 1189-1196. Read More
- Williams T.M. , Selegue J.E., Werner T., Gompel N., Kopp A., and Carroll S. B. (2008) The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila. Cell, Vol. 134, pp. 610–623. Read More
- Jeong S., Rebeiz M., Andolfatto P., Werner T., True J., Carroll S.B. (2008) The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species. Cell, Vol. 132, pp. 783-93. Read More
- Werner T., Borge-Renberg K., Mellroth P., Steiner H. and Hultmark D. (2003) Functional diversity of the Drosophila PGRP-LC gene cluster in the response to LPS and peptidoglycan. J Biol Chem, Vol. 278, Issue 29, pp. 26319-22. Read More
- Choe K.M., Werner T., Stoven S., Hultmark D, Anderson K.V. (2002). Requirement for a Peptidoglycan Recognition Protein (PGRP) in Relish Activation and Antibacterial Immune Responses in Drosophila. Science, Vol. 296, Issue 5566, pp. 359-62. Read More
- Werner, T., Liu, G., Kang, D., Ekengren, S., Steiner, H. and Hultmark, D. (2000). A family of peptidoglycan recognition proteins in the fruit fly Drosophila melanogaster. Proc Natl Acad Sci USA, Vol. 97, Issue 25, pp. 13772-7. Read More