Amy M. Marcarelli

Amy M. Marcarelli


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Associate Professor, Biological Sciences

  • PhD, Utah State University
  • BA, Colgate University


I am an ecosystem ecologist who studies biogeochemical cycles and linkages between physical, chemical and biological structure and function in watersheds. Linking these often requires understanding the underlying structure of microbial, algal, and animal communities. I am also working to place concepts of food webs into a broader ecosystem context by merging measurements of ecosystem production and food web pathways. Therefore, my research occurs at the interface of ecosystem and community ecology. I enjoy research that is both fundamental and applied, and have explored the interface between academia and management in projects examining the effects of salmon marine-derived nutrients on stream-riparian production and the effects of land use and habitat degradation on nutrient cycling and export from rivers.

One benefit of an academic career is the synergy between an active research program and undergraduate and graduate education. I currently teach undergrad and graduate courses in Limnology and Ecosystem Ecology, as well a professional development seminar for graduate students called The Scientific Profession where we cover topics related to grant writing, publishing, jobs, work-life balance, ethics, and gender issues, among many others.

Research Interests

  • Limnology
  • Ecosystem Ecology of Streams and Rivers
  • Biogeochemistry

Recent Publications

  • Baker MA, Arp CD, Goodman KJ, Marcarelli AM, Wurtsbaugh WA. 2016. Stream-lake interaction: understanding a coupled hydro-ecological system. Pp 321-348 in: Jones JB, Stanley EH (eds) Stream Ecosystems in a Changing Environment. Academic Press. Read More
  • Coble AA, Marcarelli AM, Kane ES, Stottlemyer JR, Toczydlowski D. 2016. Temporal patterns of dissolved organic matter biodegradability are similar across three rivers of varying size. Journal of Geophysical Research - Biogeosciences 121:1617-1631 Read More
  • Collins SF, Baxter CV, Marcarelli AM & Wipfli MS. 2016. Effects of experimentally added salmon subsidies on resident fishes via direct and indirect pathways. Ecosphere 7:e01248. Read More
  • Veverica TJ, Kane ES, Marcarelli AM, Green SA. 2016. Ionic liquid extraction unveils previously occluded humic-bound iron in peat pore water. Soil Science Society of America Journal 80:771-782. DOI:10.2136/sssaj2015.10.0377 Read More
  • Marcarelli AM, Huckins CJ, Eggert SL. 2015. Sand aggradation alters biofilm standing crop and metabolism in a low-gradient Lake Superior tributary. Journal of Great Lakes Research 41:1052-1059. Read More
  • Coble AA, Marcarelli AM & Kane ES. 2015. Ammonium and glucose amendments stimulate dissolved organic matter mineralization in a Lake Superior tributary. Journal of Great Lakes Research 41:801-807. Read More
  • Collins SF, Marcarelli AM, Baxter CV & Wipfli MS. 2015. A critical assessment of the ecological assumptions underpinning compensatory mitigation of salmon-derived nutrients. Environmental Management 56:571-586. Read More
  • Ebel JD, Marcarelli AM, Kohler AK. 2014. Biofilm nutrient limitation, standing crop, and metabolism responses to experimental application of salmon carcass analog in Idaho streams. Canadian Journal of Fisheries and Aquatic Sciences 71:1796-1804. Read More
  • Marcarelli AM, Baxter CV, Wipfli MS. 2014. Nutrient additions to mitigate for loss of Pacific salmon: consequences for stream biofilm and nutrient dynamics. Ecosphere 5:69. Read More
  • Ray AM, Mebane CA, Raben F, Irvine KM, & Marcarelli AM. 2014. Evaluation of a combined macrophyte-epiphyte bioassay for assessing nutrient enrichment in the Portneuf River, Idaho, USA. Environmental Monitoring and Assessment 186:4081-4096. Read More