Faculty Publications

Our faculty in the Department of Chemistry are involved in cutting-edge research. They have authored and contributed to a number of publications—both in prior work and during their tenure at Michigan Tech. Select a faculty member below for some of their most recent publications.

Lanrong Bi

  • Novel TEMPO-PEG-RGDs Conjugates Remediate Tissue Damage Induced by Acute Limb Ischemia/Reperfusion. Bi W, Li X, Bi Y, Xue P, Zhang Y, Gao X, Wang Z, Li M, Itagaki Y, Bi L. J. Med. Chem. 2012 May 10;55(9):4501-5.
  • Determination of intracellular pH using sensitive, clickable fluorescent probes. Yapici NB, Mandalapu SR, Chew TL, Khuon S, Bi L. Bioorg Med Chem Lett. 2012 Apr 1; 22(7):2440-3.
  • New rhodamine nitroxide based fluorescent probes for intracellular hydroxyl radical identification in living cells. Yapici NB, Jockusch S, Moscatelli A, Mandalapu SR, Itagaki Y, Bates DK, Wiseman S, Gibson KM, Turro NJ, Bi L. Org Lett. 2012 Jan 6;14(1):50-3.
  • Novel β-carboline-tripeptide conjugates attenuate mesenteric ischemia/reperfusion injury in the rat. Bi W, Bi Y, Xue P, Zhang Y, Gao X, Wang Z, Li M, Baudy-Floc'h M, Ngerebara N, Li X, Gibson KM, Bi L. Eur J Med Chem. 2011 Jun;46(6):2441-52.
  • A new class of β-carboline alkaloid-peptide conjugates with therapeutic efficacy in acute limb ischemia/reperfusion injury. Bi W, Bi Y, Xue P, Zhang Y, Gao X, Wang Z, Li M, Baudy-Floc'h M, Ngerebara N, Gibson KM, Bi L. Eur J. Med Chem. 2011 May;46(5):1453-62.
  • Synthetic oligodeoxynucleotide purification by polymerization of failure sequences. Fang S, Fueangfung S, Lin X, Zhang X, Mai W, Bi L, Green SA. Chem Commun (Camb). 2011 Jan 28;47(4):1345-7.
  • Synthesis and characterization of novel indole derivatives reveal improved therapeutic agents for treatment of ischemia/reperfusion (I/R) injury. Bi W, Bi Y, Xue P, Zhang Y, Gao X, Wang Z, Li M, Baudy-Floc'h M, Ngerebara N, Gibson KM, Bi L. J. Med Chem. 2010 Sep 23;53(18):6763-7.

Tarun K. Dam

  • Dam, T. K. and Brewer, C. F., Maintenance of cell surface glycan density by lectin-glycan interactions: a homeostatic and innate immune regulatory mechanism. Glycobiology 20, 1061-1064 (2010).
  • Dam, T. K. and Brewer, C. F., Lectins as pattern recognition molecules: the effects of epitope density in innate immunity. Glycobiology 20, 270-279 (2010).
  • Dam, T. K., Gerken, T. A. and Brewer, C. F. Thermodynamics of multivalent carbohydrate-lectin cross-linking interactions: importance of entropy in the bind and jump mechanism. Biochemistry, 48, 3822-3827 (2009).
  • Dam, T. K., Torres, M., Brewer, C. F. and Casadevall, A., Isothermal titration calorimetry reveals differential binding thermodynamics of variable region-identical antibodies differing in constant region for a univalent ligand. J. Biol. Chem. 283, 31366- 31370 (2008).
  • Dam, T. K., and Brewer, C. F., Effects of clustered epitopes in multivalent ligand- receptor interactions. Biochemistry, 47, 8470-8476 (2008).
  • Dam, T. K., Gerken, T. A., Cavada, B. S., Nascimento, K. S., Moura, T. R., and Brewer, C. F., Binding studies of a-GalNAc specific lectins to the a-GalNAc (Tn- antigen) form of porcine submaxillary mucin and its smaller fragments. J. Biol. Chem. 282, 28256-28263 (2007).
  • Dam, T. K. and Brewer, C. F. Fundamentals of lectin-carbohydrate interactions, in Comprehensive Glycoscience, (Kamerling, J. P., ed.), Elsevier Ltd., Vol. 3, pp. 397-452 (2007).

Shiyue Fang

  • (Invited publication) Shiyue Fang, Suntara Fueangfung, Yinan Yuan. Purification of Synthetic Oligonucleotides via Catching by Polymerization. In Current Protocols in Nucleic Acid Chemistry (Martin Egli, Piet Herdewijn, Akira Matusda, Yogesh S. Sanghvi, eds.). John Wiley and Sons, New York, 2012, Unit 10.14.1-10.14.21.
  • Yinan Yuan, Suntara Fueangfung, Xi Lin, Durga Pokharel, Shiyue Fang. Synthetic 5′-Phosphorylated Oligodeoxynucleotide Purification through Catching Full-length Sequences by Polymerization. RSC Advances 2012, 2, 2803-2808.
  • Xiang Zhang, Rudy L. Luck, Shiyue Fang. Ferrosalen and Ferrosalen-type Ligands: Structural Modulation and Applications in Asymmetric Catalysis. Organometallics 2011, 30, 2609-2616.
  • Shiyue Fang, Suntara Fueangfung, Xi Lin, Xiang Zhang, Wenpeng Mai, Lanrong Bi, Sarah A. Green. Synthetic Oligodeoxynucleotide Purification by Polymerization of Failure Sequences. Chemical Communications 2011, 47, 1345- 1347.
  • Xiang Zhang, Rudy L. Luck, Shiyue Fang. Stereoselective Synthesis of a Chiral Ferrosalen Ligand Using an Aromatization Strategy. Journal of Organometallic Chemistry 2011, 696, 2047-2052.
  • Kyrie Pappas, Xiang Zhang, Shiyue Fang. Selective Acylation of Polyamines with Acid Anhydrides and Acid Chlorides in Water. Letters in Organic Chemistry 2010, 7, 539-541.
  • Shiyue Fang, Suntara Fueangfung. Scalable Synthetic Oligodeoxynucleotide Purification with Use of a Catching by Polymerization, Washing and Releasing Approach. Organic Letters 2010, 12, 3720-3723.

Sarah A. Green

  • Hering, J. G., D. A. Dzombak, S.A. Green, R. G. Luthy, D. Swackhamer. (2014). Engagement at the Science–Policy Interface. Environmental Science and Technology, 48 (19), 11031–11033.
  • Cook, J., Nuccitelli, D., Green, S. A., Richardson, M., Winkler, B., Painting, R., R. Way, P. Jacobs, A. Skuce (2013). Quantifying the consensus on anthropogenic global warming in the scientific literature. Environmental Research Letters, 8(2), 024024. Read More
  • Kerfoot, W. C., Yousef, F., Green, S. A., Regis, R., Shuchman, R., Brooks, C. N., Sayers, M., et al. (2012). Light detection and ranging (LiDAR) and multispectral studies of disturbed Lake Superior coastal environments. Limnology And Oceanography, 57(3), 749–771. doi:10.4319/lo.2012.57.3.0749.
  • Zhu, S., Zhang, J., Vegesna, G., Luo, F.-T., Green, S. A., & Liu, H. (2011). Highly water-soluble neutral BODIPY dyes with controllable fluorescence quantum yields. Organic letters, 13(3), 438–441. doi:10.1021/ol102758z.
  • Kerfoot, W. C., F. Yousef, S. A. Green, J. W. Budd, D. J. Schwab, and H. A. Vanderploeg (2010), Approaching storm: Disappearing winter bloom in Lake Michigan, Journal of Great Lakes Research, 36, 30-41.
  • Qiu, R., S. A. Green, R. E. Honrath, M. C. Peterson, Y. Lu, and M. Dziobak (2002), Measurements of JNO3- in Snow by Nitrate-Based Actinometry, Atmospheric Environment, 36, 2563-2571.
  • Jia, M., Tang, Y., Lam, Y-F., Green, S. A., & Blough, N. V. (2009). Prefluorescent nitroxide probe for the highly sensitive determination of peroxyl and other radical oxidants. Analytical Chemistry, 81(19), 8033–8040. doi:10.1021/ac901374m.
  • Donuru, V. R., G. K. Vegesna, S. Velayudham, S. Green, and H. Y. Liu (2009), Synthesis and Optical Properties of Red and Deep-Red Emissive Polymeric and Copolymeric BODIPY Dyes, Chemistry of Materials, 21(10), 2130-2138.
  • Kerfoot, W. C., J. W. Budd, S. A. Green, J. B. Cotner, B. Biddanda, D. J. Schwab, and H. A. Varderploeg (2008), Doughnut in the desert: a late winter production pulse in Southern Lake Michigan, Limnology and Oceanography, 53(2), 589–604.
  • Ma, X., and S. A. Green (2008), Fractionation and Spectroscopic Properties of Fulvic Acid and Its Extract, Chemosphere, 72, 1425-1434.
  • Urban, N. R., M. T. Auer, S. A. Green, X. Lu, D. S. Apul, K. D. Powell, and L. Bub (2005), Carbon cycling in Lake Superior, Journal of Geophysical Research-Oceans, 110(C6).
  • Li, H. Y., J. W. Budd, and S. Green (2004), Evaluation and regional optimization of bio-optical algorithms for central Lake Superior, Journal of Great Lakes Research, 30, 443-458.
  • Ma, X. D., and S. A. Green (2004), Photochemical transformation of dissolved organic carbon in Lake Superior - An in-situ experiment, Journal of Great Lakes Research, 30, 97-112.
  • Cory, R. M., S. A. Green, and K. S. Pregitzer (2004), Dissolved Organic Matter Concentration and Composition in the Forests and Streams of Olympic National Park, WA., Biogeochemistry, 67, 269-288.
  • Chen, Z., C. H. Xue, W. Shi, F. T. Luo, S. Green, J. Chen, and H. Y. Liu (2004), Selective and sensitive fluorescent sensors for metal ions based on manipulation of side-chain compositions of poly(p-phenyleneethynylene)s, Analytical Chemistry, 76, 6513-6518.
  • Green, S. A., and B. J. Eadie (2004), Introduction to special section: Transport and transformation of biogeochemically important materials in coastal waters, Journal of Geophysical Research-Oceans, 109.

Patricia A. Heiden

  • Ghassemi Hessam; Au Ming; Chen Ning; Heiden Patricia A, and Yassar Reza S. In Situ Electrochemical Lithiation/Delithiation Observation of Individual Amorphous Si Nanorods. ACS NANO 5(10), 7805-7811 (2011) DOI: 10.1021/nn2029814
  • Dissanayake, Neluka, Levy, Miguel, Chakravarty, A., Heiden, P. A. Heiden, Chen, Ning, and Fratello, V.J. Magneto-photonic crystal optical sensors with sensitive covers. Applied Physics Letters 99, 091112 (2011)
  • Morsi, Samir M., Pakzad, Anahita, Amin, Amal, Yassar, Reza S., Heiden, Patricia A. Chemical and nanomechanical analysis of rice husk modified by ATRP-grafted oligomer. Journal of Colloid and Interface Science. 360(2) 377-385. (2011). DOI: 10.1016/j.jcis.2011.04.065
  • Ding, Xiaochu, Richter, Dana L., Matuana, Laurent M., Heiden, P. A. Efficient one-pot synthesis and loading of self-assembled amphiphilic chitosan nanoparticles for low-leaching wood preservation. Carbohydrate Polymers 86(1) 58-64 (2011) DOI: 10.1016/j.carbpol.2011.04.002
  • Chen, Ning, Tiwari, Ashutosh, and Heiden, Patricia A. Raft Copolymerization of Thermo-responsive Poly(DEGMA-B-OEGA) with Tunable LCST. Polymer Preprints 52(1), 317-318 (2011)
  • Pakzad, A., Parikh, N., Heiden, P. A., and Yassar, R. S. Revealing the 3D internal structure of natural polymer microcomposites using X-ray ultra microtomography. Journal of Microscopy 243(1) 77-85 (2011) DOI: 10.1111/j.1365-2818.2010.03483.x
  • Asthana, A, Shokuhfar, T., Gao, Q., Heiden, P. A., Friedrich, C., Yassar, R. S. Real Time Observation of Phase Transition of Anatase TiO(2) Nanotubes Into Rutile Nanoparticles by In-Situ Joule Heating Inside Transmission Electron Microscope. Advanced Science Letters. 3(4) 557-562 (2010) DOI: 10.1166/asl.2010.1191
  • Journal of Materials Research

Haiying Liu

  • Jingtuo Zhang, Mu Yang, Cong Li, Nethaniah Dorh, Fei Xie, Fen-Tair Luo, Ashutosh Tiwari, and Haiying Liu. Near-infrared Fluorescent Probes Based on Piperazine-Functionalized BODIPY Dyes for Sensitive Detection of Lysosomal pH. Journal of Materials Chemistry B, 3 (2015) 2173-2184.
  • Fen Ma, Abdul Rehman, Haiying Liu, Jingtuo Zhang, Shilei Zhu, Xiangqun Zeng. Glycosylation of Quinone-Fused Polythiophene for Reagentless and Label Free Detection of E. coli. Analytical Chemistry, 87 (3 (20015) 1560–1568.
  • Giri K. Vegesna, Jagadeesh Janjanam, Jianheng Bi, Fen-Tair Luo, Jingtuo Zhang, Connor Olds, Ashutosh Tiwari and Haiying Liu. pH-activatable near-infrared fluorescent probes for detection of lysosomal pH inside living cells. Journal of Materials Chemistry B, 2 (2014) 4500-4508
  • Zhe Wang, Chunyan Sun, Giri Vegesna, Haiying Liu, Yang Liu, Jinghong Li, Xiangqun Zeng, Glycosylated aniline polymer sensor: Amine to imine conversion on protein–carbohydrate binding, Biosensors & Bioelectronics, 46 (2013) 183-189.
  • Giri Vegesna, Srinivas Sripathi, Jingtuo Zhang, Shilei Zhu, Fen-Tair Luo, Wan Jin Jahng, Megan Frost, and Haiying Liu. Highly Water-soluble BODIPY-based Fluorescent Probe for Sensitive Detection of Nitric Oxide in Living Cells, ACS Applied Materials & Interfaces. 5 (10) (2013) 4107–4112.
  • Shilei Zhu, Jingtuo Zhang, Jagadeesh Janjanam, Giri Vegesna, Fen-Tair Luo, Ashutosh Tiwari, and Haiying Liu, Highly Water-soluble BODIPY-based Fluorescent Probes for Sensitive Fluorescent Sensing of Zinc (II), Journal of Materials Chemistry B, 1 (2013) 1722–1728. This paper has been selected as a Most Accessed Manuscript for 2013.
  • Shilei Zhu, Jingtuo Zhang, Giri Vegesna, Fen-Tair Luo, Sarah Green and Haiying Liu. Highly Water-soluble Neutral BODIPY Dyes with Controllable Fluorescence Quantum Yields. Organic Letters, 13(3) (2011) 438-441.

Rudy Luck

  • Maass, J. S.; Zeller, M.; Luck, R. L. "Synthesis and Crystal Structure of the Octametallic Ferrocene Containing Molybdenum(V) Cluster Mo4(μ3-O)4(μ2-O2P(CH2)2Fc)4O4 and Crystal Structure of 1,1'-Bis(Chloromethyl)Ferrocene"J. Cluster Sci., 2012, 23, 713-726.
  • Maass, J. S.; Zeller, M.; Breault, T. M.; Bartlett, B. M.; Sakiyama, H.; Luck, R. L. "Syntheses and Structures of Three Complexes of Formulas [L3Co(μ2-O2P(Bn)2)3CoL'][L"], Featuring Octahedral and Tetrahedral Cobalt(II) Geometries; Variable-Temperature Magnetic Susceptibility Measurement and Analysis on [(py)3Co(μ2-O2PBn2)3Co(py)][ClO4]" Inorg. Chem. (Washington, DC, U. S.), 2012, 51, 4903-4905.
  • Maass, J. S.; Luck, R. L.; Zeller, M. "The first dinuclear cobalt complex bridged by acetylamidate ligands: di-μ-acetylamido-κ2 O:N;κ2 N:O-di-μ-hydroxido-κ4 O:O-bis[bis(pyridine-κN)cobalt(III)] bis(perchlorate) acetonitrile disolvate" Acta Crystallogr., Sect. C: Cryst. Struct. Commun., 2012, C68, m233-m234.
  • Maass, J. S.; Chen, Z.; Zeller, M.; Tuna, F.; Winpenny, R. E. P.; Luck, R. L. "Syntheses, X-ray Structural Characterizations, and Thermal Stabilities of Two Nonclassical Trinuclear Vanadium(IV) Complexes, (V3(μ3-O)O2)(μ2-O2P(CH2C6H5)2)6(H2O) and (V3(μ3-O)O2)(μ2-O2P(CH2C6H5)2)6(py), and Polymeric Complexes of Stoichiometry (VO(O2PR2)2)∞, R2 = Ph2 and o-(CH2)2(C6H4)" Inorg. Chem. (Washington, DC, U. S.), 2012, 51, 2766-2776.
  • Maass, J. S.; Zeller, M.; Holmes, D.; Bayse, C. A.; Luck, R. L. "Syntheses, 95Mo NMR Spectroscopy and Structures of Distorted Cubic Mo4(μ3-O)4(μ2-O2P(CH2C6H5)2)4O4 and the Open Mixed-Valent Cluster, Mo4(μ3-O)2(μ2-O2P(CH2C6H5)2)6O6" J. Cluster Sci., 2011, 22, 193-210.
  • Maass, J. S.; Chen, Z.; Zeller, M.; Luck, R. L. "Expanding molecular transition metal cubane clusters of the form [M4(μ3-O)4]12+: syntheses, spectroscopic and structural characterizations of molecules M4(μ3-O)4(O2P(Bn)2)4(O4), M = VV and WV" Dalton Trans., 2011, 40, 11356-11358.
  • Feng, L.; Maass, J. S.; Luck, R. L. "Synthesis and characterization of four cubical molybdenum(V) tetramers and their catalytic properties for the epoxidation of cis-cyclooctene using H2O2" Inorg. Chim. Acta, 2011, 373, 85-92.
  • Feng, L.; Luck, R. L. "Synthesis and Structural Characterization of a Dimolybdenum Complex Bridged by the Hydroxymethylphenylphosphinate Ligand" J. Chem. Crystallogr., 2011, 41, 1317-1322.
  • Sreehari, S.; Luck, R. L. "Synthesis of Mo(V) Dimers of the Form [Mo2O2(acac)2(μ-O)(μ-OC2H5)(μ-O2CR)], the Tetramer [Mo2O2(acac)2(μ-O)(μ-OC2H5)(μ-O2C)C6H4(p-μ-O2C)Mo2O2(acac)2(μ-O)(μ-OC2H5)], and, the Crystal and Molecular Structures of [Mo2O2(acac)2(μ-O)(μ-OC2H5)(μ-OOCC6H5)] and [Mo2O2(acac)2(μ-O)(μ-OC2H5)(μ-OOCC6H4(o-OH))]" J. Cluster Sci., 2010, 21, 525-541.

Lynn R. Mazzoleni

  • China, S., B. Scarnato, R.C. Owen, B. Zhang, M.T. Ampadu, S. Kumar, K., Dzepina, M.P. Dziobak, P. Fialho, J.A. Perlinger, J. Hueber, D. Helmig, L.R. Mazzoleni, and C. Mazzoleni, Morphology and Mixing State of Aged Soot Particles at a Remote Marine Free Troposphere Site: Implications for Optical Properties, Geophysical Research Letters, doi: 10.1002/2014GL062404, 2015. Read More
  • Dzepina, K., C. Mazzoleni, P. Fialho, S. China, B. Zhang, R.C. Owen, D. Helmig, J. Hueber, S. Kumar, J.A. Perlinger, L. Kramer, M.P. Dziobak, M.T. Ampadu, S. Olsen, D.J. Wuebbles, and L.R. Mazzoleni, Molecular Characterization of Free Tropospheric Aerosol Collected at the Pico Mountain Observatory: A Case Study with Long Range Transported Biomass Burning Plumes, Atmospheric Chemistry and Physics Discussions, 14, 24753-24810, 2014.
  • Kane, E.S., L.R. Mazzoleni, C.J. Kratz, J.A. Hribljan, C.P. Johnson, T.G. Pypker, and R.A. Chimmer, Peat Porewater Dissolved Organic Carbon Concentration and Lability Increase with Warming: A Field Manipulation Experiment in a Poor-Fen, Biogeochemistry, doi:10.1007/s10533-014-9955-4, 2014. Read More
  • Zhao, Y., A.G. Hallar, and L.R. Mazzoleni, Atmospheric Organic Matter in Clouds: Exact Masses and Molecular Formula Identification using Ultrahigh Resolution FT-ICR Mass Spectrometry, Atmospheric Chemistry and Physics, 13, 12343-12362, 2013. Read More
  • Hallar, A.G., D.H. Lowenthal, V. Samburova, G. Chirokova, L.R. Mazzoleni, B. Zielinska, I.B. McCubbin, C. Dodson, T. Kristensen, Overview of Hygroscopic Properties of Aerosol Organics Study at the Storm Peak Laboratory, Journal of Geophysical Research, Vol. 118, doi: 10.1002/jgrd.50373, 2013. Read More
  • Kristensen, T.B., H. Wex, B. Nekat, J.K. Nøjgaard, D. van Pinxteren, D.H. Lowenthal, L.R. Mazzoleni, K. Dieckmann, C. Bender Koch, T.F. Mentel, H. Herrmann, A.G. Hallar, D. Stratmann, and M. Bilde. Hygroscopic Growth and CCN Activity of HULIS from Different Environments, Journal of Geophysical Research, Vol. 117, D22203, doi:10.1029/2012JD018249, 2012 Read More
  • Kundu, S., R. Fisseha, A.L. Putman, T.A. Rahn, and L.R. Mazzoleni, High Molecular Weight SOA Formation during Limonene Ozonolysis: Insights from Ultrahigh-Resolution FT-ICR Mass Spectrometry Characterization, Atmospheric Chemistry and Physics, Vol. 12, 5523–5536, 2012. Read More
  • Mazzoleni, L.R., P. Saranjampour, M.M. Dalbec, V. Samburova, B. Zielinska, A.G. Hallar, D. Lowenthal, and S. Kohl, Identification of Water-Soluble Organic Carbon in Nonurban Organic Aerosols using Ultrahigh-Resolution FT-ICR Mass Spectrometry: Organic Anions, Environmental Chemistry, Vol. 9(3) 285-297, 2012. Invited Special Issue Paper Read More
  • LeClair, J.P., J.L. Collett and L.R. Mazzoleni, Fragmentation Analysis of Water-Soluble Atmospheric Organic Matter using Ultrahigh-Resolution Mass Spectrometry, Environmental Science and Technology, Vol. 46 (8), pp. 4312–4322, 2012. Read More
  • Putman, A.L., J.H. Offenberg, R. Fisseha, S. Kundu, T.A. Rahn, and L.R. Mazzoleni, Ultrahigh-Resolution FT-ICR Mass Spectrometry Characterization of a-Pinene Ozonolysis SOA, Atmospheric Environment, Vol. 46, pp. 164-172, 2012. Read More
  • Kroll, J. H., N.D. Donahue, J.L. Jimenez, S.H. Kessler, M.R. Canagaratna, K.R. Wilson, K.E. Altieri, L.R. Mazzoleni, A.S. Wozniak, H. Bluhm, E.R. Mysak, J.D. Smith, C.E. Kolb, and D.R. Worsnop, Carbon Oxidation State as a Metric for Describing the Chemistry of Atmospheric Organic Aerosol, Nature Chemistry, Vol. 3(2), pp. 133-139, 2011. Read More
  • Mazzoleni, L.R., B.M. Ehrmann, X. Shen, A.G. Marshall, and J.L. Collett, Water-Soluble Atmospheric Organic Matter in Fog Water: Exact Masses and Chemical Formula Identification by Ultrahigh Resolution FT-ICR Mass Spectrometry, Environmental Science and Technology, Vol. 44 (10), pp. 3690–3697, 2010. Read More

Pushpalatha Murthy

  • Mimi Yang, Sasha Teymorian, Philip Olivares, Pushpalatha P.N.Murthy (2015) Extracellular expression of alkaline phytase in Pichia pastoris: the GAP promoter is more efficient than the AOX1 promoter. Biotechnology Reports 6, 112-118.
  • P.P.N.Murthy, M. Thompson, K. Hungwe (2014) The Development of a Semester-long, Inquiry-Based Laboratory Course in Upper-Level Biochemistry and Molecular Biology. J. Chemical Education 91, 1909-1917.
  • M. Yang, S. Johnson, P.P.N. Murthy (2012) Enhancement of alkaline phytase production in Pichia pastoris: influence of gene dosage, sequence optimization and expression temperature. Protein Express. Purif. 84, 247-254.
  • S.C. Johnson, M.Yang, P.P.N. Murthy (2010) Heterologous expression and functional characterization of a plant alkaline phytase in Pichia pastoris. Protein Express. Purif. 74, 196-203.
  • C. Xue, S. Velayudhan, S. C. Johnson, R. Saha, A. Smith#, W. Brewer, P.P.N. Murthy, ST. Bagley, Haiying Liu (2009) Highly water –soluble, fluorescent, conjugated fluorine-based glycopolymers with poly(ethylene glycol)-tethereed spacers for sensitive detection of Escherichia coli. Chem. Eur. J. 15, 2289-2295.
  • Pushpalatha P.N. Murthy (2007) Identification of inositol phosphates by NMR spectroscopy: unraveling structural diversity. In Proceedings of the Bouyoucos conference on Biogeochemical interaction of inositol phosphates in the environment, B.L. Turner, A.E. Richardson, and E.J. Mullaney (Editors), CB international, Cambridge, MA, pp 7-22
  • Ping Yang, Bernard Spiess, Pushpalatha P.N. Murthy, Richard E. Brown (2007) Influence of metal cations on the intramolecular hydrogen-bonding network in phosphorylated compounds. J. Phys. Chem. 111, 3602-3612
  • Cuihua Xue, Sonali P. Jog, Pushpalatha P. N. Murthy, and Haiying Liu (2006) Synthesis of highly water-soluble fluorescent conjugated glycopoly(p-phenylene)s for lectin and Escherichia coli. Biomacromolecules, 7, 2470-2474
  • Bakul Dhagat Mehta, Sonali P. Jog, Steven C. Johnson and Pushpalatha P.N. Murthy (2006) Lily pollen alkaline phytase is a histidine phosphatase similar to mammalian multiple inositol polyphopsphate phosphatase (MINPP), Phytochemistry, 67, 1874-1886.
  • B.G. Garchow, S.P. Jog, B. D. Mehta, J.M. Monosso (posthumous), P.P.N. Murthy (2006) Alkaline phytase from Lilium longiflorum: purification and structural characterization. Protein Express. Purif. 46, 221-232.

Kathryn A. Perrine

  • Perrine, K. A.; Van Spyk, M. H. C.; Margarella, A. M.; Winter, B.; Faubel, M.; Bluhm H.; Hemminger, J. C. Characterization of the acetonitrile aqueous solution/vapor interface by liquid-jet X-ray photoelectron spectroscopy. J. Phys. Chem. C, 118(50) 2014 29378–29388.
  • Margarella, A. M.; Perrine, K. A.; Lewis, T.; Faubel, M.; Winter, B.; Hemminger, J. C. Dissociation of sulfuric acid in aqueous solution: determination of the photoelectron spectral fingerprints of H2SO4, HSO4- and SO4- in water. J. Phys. Chem. C, 117(16) 2013 8131-8137.
  • Perrine, K. A.; Lin, J.-M..; Teplyakov, A. V. Controlling the formation of metallic nanoparticles on functionalized silicon surfaces. J. Phys. Chem. C, 116(27) 2012 14431-14444
  • Perrine, K. A.; Rodríguez-Reyes, J. C. F.; Teplyakov, A. V. Simulating the reactivity of disordered surfaces: TiCN thin films. J. Phys. Chem. C, 115 2011 15432-15439.
  • Perrine, K. A.; Teplyakov, A. V. Metallic nanostructure formation limited by the surface hydrogen on silicon. Langmuir, 26 (15) 2010 12648-12658.
  • Perrine, K. A.; Teplyakov, A. V. Reactivity of Selectively Terminated Single Crystal Silicon Surfaces. Chem. Soc. Rev., 39(8) 2010 3256 – 3274.
  • Perrine, K. A.; Leftwich, T. R.; Weiland, C. R.; Madachik, M.; Opila, R. L.; Teplyakov, A. V. Reactions of aromatic bifunctional molecules on silicon surfaces: nitrosobenzene and nitrobenzene. J. Phys. Chem. C, 113(16) 2009 6643-6653.
  • Perrine, K. A.; Skliar, D. B.; Willis, B.; Teplyakov, A. V. Molecular Level Investigation of 2,2,6,6-tetramethyl-3,5-heptanedione on Si(100)-2x1: Spectroscopic and Computational Studies. Surf. Sci., 602 2008 222-2231.
  • Ozturk, O.; Black, T. J.; Perrine, K.; Pizzolato, K; Williams, C. T.; Parsons, F. W.; Ratliff, J. S.; Gao, J.; Murphy, C. J.; Xie, H.; Ploehn, H. J.; Chen, D. A. Thermal Decomposition of Generation-4 Polyamidoamine Dendrimer Films: Decomposition Catalyzed by Dendrimer-Encapsulated Pt Particles. Langmuir 21(9) 2005 3998-4006.

Dario Stacchiola

  • “The Role of Ceria in Oxidative Dehydrogenation on Supported Vanadia Catalysts” MV Ganduglia-Pirovano, C Popa, J Sauer, H Abbott, A Uhl, M Baron, D Stacchiola, O Bondarchuk, S Shaikhutdinov, HJ Freund, J. Am. Chem. Soc. In press. Read More
  • “One-dimensional supramolecular surface structures: 1,4- diisocyanobenzene on Au(111) surfaces”, JA Boscoboinik, FC Calaza, Z Habeeb, DW Bennett, DJ Stacchiola, MA Purino, WT Tysoe, ACS Nano. In press.
  • “Coverage Effects on the Palladium-catalyzed Synthesis of Vinyl Acetate: Comparison Between Theory and Experiment”, F Calaza, D Stacchiola, M Neurock, WT Tysoe, J. Am. Chem. Soc. In press. Read More
  • “Gold, Copper, and Platinum Nanoparticles Dispersed on CeOx/TiO2(110) Surfaces: High Water-Gas Shift Activity and the Nature of the Mixed-Metal Oxide at the Nanometer Level”, JB Park, J Graciani, J Evans, D Stacchiola, SD Senanayake, L Barrio, P Liu, JF. Sanz, J Hrbek, JA Rodriguez, J. Am. Chem. Soc. 132, 356–363. 2010. Read More
  • “Water-Gas Shift Reaction on a Highly Active Inverse CeOx/Cu(111) Catalyst: Unique Role of Ceria Nanoparticles”, JA Rodriguez, J Graciani, J Evans, JB Park, F Yang, D Stacchiola, SD Senanayake, S Ma, M Perez, P Liu, JF Sanz, J Hrbek, Angew. Chem. Int. Ed 48, 8047 – 8050. 2009. Read More
  • “Interaction of CO with OH on Au(111): HCOO, CO3 and HOCO as Key Intermediates in the Water-Gas Shift Reaction”, S Senanayake, D Stacchiola, P Liu, CB Mullins, J Hrbek, J Rodriguez J. Phys. Chem. C 113, 19536–19544. 2009. Read More
  • “Resolving the Atomic Structure of Vanadia Monolayer Catalysts: Monomers, Trimers and Oligomers on Ceria”, M Baron, H Abbott, O Bondarchuk, D Stacchiola, A Uhl, S Shaikhutdinov,HJ Freund, C Popa, MV Ganduglia-Pirovano, J Sauer, Angew. Chem. Int. Ed 48, 8006 - 8009. 2009. Read More

Marina Tanasova

  • Altered Minor Groove Hydrogen Bonds in DNA Block Transcription Elongation by T7 RNA Polymerase, ChemBioChem, 2015
  • Sensing Remote Chirality: Stereochemical Determination of β-, γ-, and δ-Chiral Carboxylic Acids, Angew. Chem. Int. Ed. 2015 Read More
  • Quantification of Pyrophosphate as a Universal Approach to Determine Polymerase Activity and Assay Polymerase Inhibitors, Anal. Biochem. 2015
  • "Fluorescent THF-Based Fructose Analogue Exhibits Fructose-Dependent Uptake", ChemBioChem, 2013 Read More
  • "Chemistry and Biology of Acylfulvenes: Sesquiterpene-Derived Antitumor Agents", Chem. Rev. 2012 Read More

Martin Thompson

  • Thompson, M. (2009) Thermodynamic and kinetic analysis of bromodomain-histone interactions. Methods in Enzymology, Biothermodynamics, Part B, 466. In press.
  • Thompson, M. (2009) Polybromo-1: the chromatin targeting subunit of the PBAF complex. Biochimie. 91, 309-319.
  • Kupitz, C., Chandrasekaran, R., and Thompson, M. (2008) Kinetic analysis of acetylation- dependent Pb1 bromodomain-histone interactions. Biophys. Chem. 136, 7-12.
  • Garzón, J.F.G., Kupitz, C., Bailey, J., and Thompson, M. (2008) Acetylation-dependent binding analysis of the yeast Gcn5 bromodomain protein. American Journal of Undergraduate Research 7, 19-26.
  • Thompson, M., and Chandrasekaran, R. (2008) Thermodynamic analysis of acetylation- dependent Pb1 bromodomain-histone H3 interactions. Analytical Biochemistry 374, 304-312.
  • Chandrasekaran, R., and Thompson, M. (2007) Polybromo-1-bromodomains bind histone H3 at specific acetyl-lysine positions. Biochemical and Biophysical Research Communications 355, 661-666.
  • Thompson, M. (2007) Spectral Properties and DNA Targeting Features of a Thiazole Orange- Peptide Bioconjugate. Biomacromolecules 8, 3628 - 3633.

Ashutosh Tiwari

  • Tiwari A , Liba A, Sohn SH, Seetharaman SV, Bilsel O, Matthews CR, Hart PJ, Valentine JS, and Hayward LJ. Metal deficiency increases aberrant hydrophobicity of mutant superoxide dismutases that cause amyotrophic lateral sclerosis. J Biol Chem. (2009) 284(40):27746-27758.
  • Molnar KS, Karabacak NM, Johnson JL, Wang Q, Tiwari A , Hayward LJ, Coales SJ, Hamuro Y and Agar JN. A common property of amyotrophic lateral sclerosis -associated variants: Destabilization of the Cu/Zn superoxide dismutase electrostatic loop. J Biol Chem. (2009) 284(45):30965-30973.
  • Karabacak NM, Li L, Tiwari A, Hayward LJ, Hong P, Easterling ML, and Agar JN. Sensitive and specific identification of wild-type and variant proteins from 8 to 669 kDa using top-down mass spectrometry. Mol Cell Proteomics. (2009) 8(4):846-856.
  • Cao X, Antonyuk S, Seetharaman SV, Whitson LJ, Taylor AB, Holloway SP, Strange RW, Doucette PA, Valentine JS, Tiwari A, Hayward LJ, Padua S, Cohlberg JA, Hasnain SS, and Hart PJ. Structures of the G85R variant of SOD1 in familial ALS. J Biol Chem. (2008) 283(23): 16169-77.
  • Shaw BF, Lelie HL, Durazo A, Nersissian AM, Xu G, Chan PK, Gralla EB, Tiwari A, Hayward LJ, Borchelt DR, Valentine JS, and Whitelegge JP. Detergent-insoluble aggregates associated with amyotrophic lateral sclerosis in transgenic mice contain primarily full-length, unmodified superoxides dismutase-1. J Biol Chem. (2008) 283(13): 8340-8350.
  • Watanabe S, Nagano S, Duce J, Kiaei M, Li Q-X, Tucker SM, Tiwari A, Brown RH, Jr., Beal MF, Hayward LJ, Culotta VC, Yoshihara S, Sakoda S, and Bush AI. Increased affinity for copper mediated by cysteine 111 in forms of mutant superoxide dismutase 1 linked to amyotrophic lateral sclerosis. Free Radic Biol Med. (2007) 42(10): 1534-1542.
  • Tiwari A and Bhat R. Stabilization of yeast hexokinase A by polyol osmolytes: Correlation with physicochemical properties of aqueous solutions. Biophys Chem. (2006) 124(2):90-99.

Loredana Valenzano

  • J. Huang, L. Valenzano, T.V. Singh, R. Pandey, G.N. Sant, The Influence of (Mg, Al, Fe) Impurities on Triclinic Ca3SiO5: Interpretations from First Principles Calculations, Crystal Growth and Design, in press (2014)
  • S. Chavan, F. Bonino, L. Valenzano, B. Civalleri, C. Lamberti, N. Acerbi, J. Cavka, M. Leistner, S. Bordiga, Fundamental Aspects of H2S Adsorption on CPO-27-Ni, J. Chem. Phys. C, 117, 15615-15622 (2013)
  • D. Gianolio, J.G. Vitillo, B. Civalleri, S. Bordiga, U. Olsbye, K.P. Lillerud, L. Valenzano, C. Lamberti, Combined Study of Structural Properties on Metal-Organic Frameworks with Same Topology but Different Linkers or Metal, 15th International Conference on X-ray Absorption Fine Structure (XAFS15), Journal of Physics: Conference Series, 430, 012134 (2013)
  • S. Zhu, J. Bi, G. Vegesna, J. Zhang, F.-T. Luo, L. Valenzano*, H. Liu, Functionalization of BODIPY Dyes at 2,6-Positions through Formyl Groups, RSC Advances, 3, 4793-4800 (2013)
  • J. Zhang, S. Zhu, L. Valenzano, F.-T. Luo, H. Liu, BODIPY-based Ratiometric Fluorescent Probes for Sensitive and Selective Sensing of Cyanide Ion, RSC Advances 3, 68-74 (2013)
  • A.J. Kennedy, L. Valenzano*, Computational Prediction of the Behavior of MOF-74 under Hydrated Conditions, Am. Chem. Soc., Div. Fuel Chem., 57 (1), 913-916 (2012)
  • L. Valenzano*, W. J. Slough, W. F. Perger, Accurate Prediction of Second-Order Elastic Constants from First Principles: PETN and TATB, AIP Conf. Proc. 1426, 1191 (2012) Read More
  • W. J. Slough, L. Valenzano, W. F. Perger, The terahertz infrared spectrum of cyclotrimethylenetrinitramine: targeting anharmonic modes for the fingerprinting and detection of RDX, AIP Conf. Proc. 1426, 1219 (2012) Read More
  • J. Criswell, W. F. Perger, K. M. Flurchick, L. Valenzano, W. J. Slough, The effect of a simulated volumetric expansion: Calculated vibrational properties and elastic constants of pentaerythritol, AIP Conf. Proc. 1426, 1179 (2012) Read More
  • K. M. Flurchick, W. F. Perger, W. J. Slough, L. Valenzano, Gamma phase RDX: Initial study of geometry, spectrum and EOS, AIP Conf. Proc. 1426, 567 (2012) Read More
  • W. F. Perger, W. J. Slough, L. Valenzano, K. M. Flurchick, Calculation of the vibrational spectra of α-rdx using the Grimme DFT potential, AIP Conf. Proc. 1426, 571 (2012) Read More
  • L. Valenzano, J. G. Vitillo, S. Chavan, B. Civalleri, F. Bonino, S. Bordiga, C. Lamberti, Structure-activity relationships of simple molecules adsorbed on CPO-27-Ni Metal-Organic Framework: in situ experiments vs. theory, Catal. Today 182, 67 (2012) Read More
  • J. C. Tan, B. Civalleri, C.-C. Lin, L. Valenzano, R. Galvelis, P.-F. Chen, T.-D. Bennet, C. Mellot-Draznieks, C. M. Zicovich-Wilson, A. K. Cheetham, Elasticity of Sodalite ZIF-8: a Porous Metal-Organic Framework Material with an Exceptionally Low Shear Modulus, Phys. Rev. Lett. 108, 095502, (2012) Read More
  • S. Chavan, J. G. Vitillo, D. Gianoglio, O. Zavorotynska, B. Civalleri, S. Jakobsen, M.H. Nilsen, L. Valenzano, C. Lamberti, K. P. Lillerud, S. Bordiga, H2 storage in isostructural UiO-67 and UiO-66 MOFs, Phys. Chem. Chem. Phys. 14, 1614 (2012) Read More
  • L. Valenzano, B. Civalleri, K. Sillar, J. Sauer, Heat of adsorption of CO and CO2 in metalorganic frameworks: Quantum mechanical study of CPO-27-M (M = Mg, Ni, Zn), J. Phys. Chem. C 115, 21777 (2011) Read More
  • L. Valenzano, B. Civalleri, S. Chavan, S. Bordiga, M. Nilsen, S. Jakobsen, K.P. Lillerud, C. Lamberti, Disclosing the complex structure of UiO-66: a synergic combination of experiment and theory, Chem. Mater. 23, 1700 (2011) Read More
  • F. Bardelli, M. Benvenuti, P. Costagliola, F. Di Benedetto, P. Lattanzi, C. Meneghini, M. Romanelli, L. Valenzano, Arsenic uptake by natural calcite: an XAS study, Geo. Cosmo. Acta, 75, 3011 (2011) Read More
  • L. Valenzano, B. Civalleri, S. Chavan, G.T. Palomino, C.O. Arean, S. Bordiga, Computational and experimental studies on the adsorption of CO, N2 and CO2 on Mg-MOF-74, J. Phys. Chem. C, 114, 11185 (2010) Read More

Xiaohu Xia

  • Ye, H.; Yang, K.; Tao, J.; Liu, Y.; Zhang, Q.; Habibi, S.; Nie, Z.; Xia, X.* An Enzyme-free signal amplification technique for ultrasensitive colorimetric assay of disease biomarkers. ACS Nano, 2017, in press, DOI: 10.1021/acsnano.6b08232. Read More
  • Gao, Z.; Liu, G.G.; Ye, H.; Rauschendorfer, R.; Tang, D.; Xia, X.* Facile colorimetric detection of silver ions with picomolar sensitivity. Analytical Chemistry, 2017, in press, DOI: 10.1021/acs.analchem.6b05026. Read More
  • Ye, H.; Wang, Q.; Catalano, M.; Lu, N.; Vermeylen, J.; Kim, M.; Liu, Y.; Sun, Y.; Xia, X.* Ru nanoframes with an fcc structure and enhanced catalytic properties. Nano Letters, 2016, 16, 2812-2817. (it was highlighted by C&EN News in the issue of March 28, 2016, and U.S. DOE office of science on April 4, 2016) Read More
  • Xia, X.;* Zhang, J.; Lu, N.; Kim, M.; Ghale, K.; Xu, Y.; McKenzie, E.; Liu, J.; Ye, H. Pd-Ir core-shell nanocubes: A type of highly efficient and versatile peroxidase mimic. ACS Nano, 2015, 9, 9994-10004. (it was highlighted by U.S. DOE Office of Science on Sept. 17, 2015) Read More
  • Xia, Y.;* Xia, X.; Peng, H.-C. Shape-controlled synthesis of colloidal metal nanocrystals: thermodynamic versus kinetic products. Journal of the American Chemical Society, 2015, 137, 7947–7966. Read More
  • Xia, X.; Figueroa-Cosme, L.; Tao, J.; Peng, H.-C.; Niu, G.; Zhu, Y.; Xia, Y. Facile synthesis of iridium nanocrystals with well-controlled facets using seed-mediated growth. Journal of the American Chemical Society, 2014, 136, 10878–10881. Read More
  • Xia, X.; Xie, S.; Liu, M.; Peng, H.-C.; Lu, N.; Wang, J.; Kim, M. J.; Xia, Y. On the role of surface diffusion in determining the shape or morphology of noble-metal nanocrystals. Proceedings of the National Academy of Sciences USA 2013, 110, 6669–6673. (it was highlighted in C&EN News, April 15, 2013, and many other news media) Read More
  • Xia, X.; Choi, S. I.; Herron, J. A.; Lu, N.; Scaranto, J.; Peng, H.-C.; Wang, J.; Mavrikakis, M.; Kim, M. J.; Xia, Y. Facile synthesis of Pd right bipyramids and their use as seeds for overgrowth and as catalysts for formic acid oxidation. Journal of the American Chemical Society 2013, 135, 15706–15709. Read More
  • Xia, X.; Wang, Y.; Ruditskiy, A.; Xia, Y. Galvanic replacement: A simple and versatile route to metal nanostructures with tunable and well-controlled. Advanced Materials 2013, 25, 6313–6333. (for the 25th anniversary issue of Advanced Materials) Read More
  • Xia, X.; Zeng, J.; Otejen, L. K.; Li, Q.; Xia, Y. Quantitative analysis of the role played by poly(vinylpyrrolidone) in seed-mediated growth of silver nanocrystals. Journal of the American Chemical Society 2012, 134, 1793–1801. Read More
  • Xia, X.; Xia, Y. Symmetry breaking during seeded growth of nanocrystals. Nano Letters 2012, 12, 6038–6042. Read More
  • Xia, X.; Yang, M.; Wang, Y.; Zheng, Y.; Li, Q.; Chen, J.; Xia, Y. Quantifying the coverage density of poly(ethylene glycol) chains on the surface of gold nanostructures. ACS Nano 2012, 6, 512–522. Read More
  • Xia, X.; Zeng, J.; McDearmon, B.; Zheng, Y.; Li, Q.; Xia, Y. Silver nanocrystals with concave surfaces and their optical and surface-enhanced Raman scattering properties. Angewandte Chemie International Edition 2011, 50, 12542–12546. (it was highlighted on the inside cover) Read More