Our faculty in the Department of Chemistry are involved in cutting-edge research. They have authored and contributed to a number of publications—both in prior work and during their tenure at Michigan Tech. Select a faculty member below for some of their most recent publications.
Tarun K. Dam
- Edwards, J. L., Kadav, P. D., Bandyopadhyay, P., Dam T. K. Revealing the identity of human Galectin-3 as a glycosaminoglycan-binding protein. Methods in Molecular Biology, in press. (2021).
- Kadav, P. D., Edwards, J. L., Krycia, J., Bandyopadhyay, P., Dam T. K. Rapid detection and purification of Galectin-3 by the Capture and Release (CaRe) method. Methods in Molecular Biology, in press. (2021).
- Dam T. K., Edwards, J. L., Kadav, P. D., Brewer, C. F. Mechanism of Mucin Recognition by lectins – A thermodynamic study. Methods in Molecular Biology, in press. (2021).
- Kadav, PD , Edwards, J.L., Bandyopadhyay, P., Brewer, C F, Dam, TK. Molecular and Mechanistic Basis of Lectin-Glycan Interactions. Comprehensive Glycoscience (Second Edition), Volume 3, 2021, Pages 346-404. https://www.sciencedirect.com/science/article/pii/B9780128194751000547#!
- Welch CJ, Kadav PD, Edwards JL, Krycia J, Talaga ML, Bandyopadhyay P, Dam TK. A Rapid and Facile Purification Method for Glycan-Binding Proteins and Glycoproteins. Curr Protoc Protein Sci. 2020 Sep;101(1):e113. doi: 10.1002/cpps.113. PMID: 32882112.
- Welch CJ, Talaga ML, Kadav PD, Edwards JL, Bandyopadhyay P, Dam TK. A capture and release method based on noncovalent ligand cross-linking and facile filtration for purification of lectins and glycoproteins. J Biol Chem. 2020 Jan 3;295(1):223-236. doi: 10.1074/jbc.RA119.010625. Epub 2019 Dec 2. PMID: 31792056; PMCID: PMC6952606.
- Talaga ML, Fan N, Fueri AL, Brown RK, Bandyopadhyay P, Dam TK. Multitasking Human Lectin Galectin-3 Interacts with Sulfated Glycosaminoglycans and Chondroitin Sulfate Proteoglycans. Biochemistry, 55, 4541-51, (2016).
- Dam TK, Talaga ML, Fan N, Brewer CF. Measuring Multivalent Binding Interactions by Isothermal Titration Calorimetry. Methods Enzymol., 567, 71-95, (2016).
- Fan N, Talaga ML, Brown RK, Fueri AL, Bandyopadhyay P, Dam TK. Glycan-Dependent Mutual and Reversible Sequestration of Two Thyroid Cancer Biomarkers. Thyroid, 25, 1339-46, (2015).
- Talaga ML, Fan N, Fueri AL, Brown RK, Chabre YM, Bandyopadhyay P, Roy R, Dam TK. Significant other half of a glycoconjugate: contributions of scaffolds to lectin-glycoconjugate interactions. Biochemistry. 2014 Jul 15;53(27):4445-54. doi: 10.1021/bi5001307. Epub 2014 Jul 3.
Shiyue Fang
- Dhananjani N. A. M. Eriyagama, Yipeng Yin, Shiyue Fang. Automated Stepwise PEG Synthesis Using a Base-Labile Protecting Group. Tetrahedron 2022, 119, 132861.
- Komal Chillar, Yipeng Yin, Dhananjani N. A. M. Eriyagama, Shiyue Fang. Determination of Optical Density (OD) of Oligodeoxynucleotides from HPLC Peak Area. ChemRxiv [Preprint], 2022, March, 15. doi:10.26434/chemrxiv-2022-hdqzr. Open Access
- Logan Mikesell, Dhananjani N. A. M. Eriyagama,+ Yipeng Yin,+ Bao-Yuan Lu, Shiyue Fang. Stepwise PEG Synthesis Featuring Deprotection and Coupling in One Pot. Beilstein Journal of Organic Chemistry 2021, 17, 2976-2982. Open Access funded by Beilstein-Institut (+ Equal contributors)
- Shiyue Fang. The Ion Pair Thermal Model of MALDI MS. ChemRxiv [Preprint], 2021, October, 19. doi:10.33774/chemrxiv-2021-qkd7w. Open Access.
- Shiyue Fang, Dhananjani Eriyagama, Yinan Yuan, Shahien Shahsavari, Jinsen Chen, Xi Lin, Bhaskar Halami. Dim and Dmoc Protecting Groups for Oligodeoxynucleotide Synthesis. Current Protocols in Nucleic Acid Chemistry, 2020, 82, e111. doi:10.1002/cpnc.111.
- Bhaskar Halami, Dhananjani N. A. M. Eriyagama, Komal Chillar, Zack Nelson, Lucas Prehoda, Yipeng Yin, Bao-Yuan Lu, Brett Otto, Liam Haggerty, Shiyue Fang. Linear Oligosulfoxides: Synthesis and Solubility Studies. Tetrahedron Letters, 2019, 60, 151306.
- Shahien Shahsavari, Dhananjani Eriyagama, Jinsen Chen, Bhaskar Halami, Yipeng Yin, Komal Chillar, Shiyue Fang. Sensitive Oligodeoxynucleotide Synthesis Using Dim and Dmoc as Protecting Groups. The Journal of Organic Chemistry 2019, 84, 13374-13383.
- Shahien Shahsavari, Dhananjani N. A. M. Eriyagama, Bhaskar Halami, Vagarshak Begoyan, Marina Tanasova, Jinsen Chen, Shiyue Fang. Electrophilic Oligodeoxynucleotide Synthesis using dM-Dmoc for Amino Protection. Beilstein Journal of Organic Chemistry 2019, 15, 1116-1128.
- Dhananjani N. A. M. Eriyagama, Shahien Shahsavari, Bhaskar Halami, Bao-Yuan Lu, Fengping Wei, Shiyue Fang. Parallel, Large Scale and Long Synthetic Oligodeoxynucleotide Purification Using the Catching Full-length Sequence by Polymerization Technique. Organic Process Research and Development 2018, 22, 1282-1288.
- Bhaskar Halami, Shahien Shahsavari, Zack Nelson, Lucas Prehoda, Dhananjani N. A. M. Eriyagama, Shiyue Fang. Incorporation of Sensitive Ester and Chloropurine Groups into Oligodeoxynucleotides through Solid Phase Synthesis. ChemistrySelect 2018, 3, 8857-8862.
- Shahien Shahsavari, Chase McNamara, Mark Sylvester, Emily Bromley, Savannah Joslin, Bao-Yuan Lu, Shiyue Fang. Amine Protecting Groups Deprotectable under Nearly Neutral Oxidative Conditions. Beilstein Journal of Organic Chemistry 2018, 14, 1750-1757.
- Shahien Shahsavari, Travis Wigstrom, James Gooding, Chase McNamara, Shiyue Fang. dM-Dim for Carboxylic Acid Protection. Tetrahedron Letters 2018, 59, 1763-1766.
Haiying Liu
- Near-infrared fluorescent probe based on rhodamine derivative for detection of NADH in live cells. Yibin Zhang, Dilka Liyana Arachchige, Adenike Olowolagba, Rudy L Luck, Haiying Liu. Methods 204, 22-28.
- A two-photon fluorogenic probe based on a coumarin schiff base for formaldehyde detection in living cells. Yibin Zhang, Xianyu Qiu, Lin Sun, Qin Yan, Rudy L Luck, Haiying Liu. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 274, 121074.
- Near-infrared Fluorescent Probe based on Cyanine Scaffold for Sensitive Detection of Uranyl Ions in Living Cells and Water Samples. Yibin Zhang, Lin Sun, Qing Yan, Xianyu Qiu, Yueting Cheng, Boling Wang, Xiaoping Tan, Mingxi Fang, Rudy L Luck, Haiying Liu. Microchemical Journal, 107619.
- Ratiometric Detection of Glutathione Based on Disulfide Linkage Rupture between a FRET Coumarin Donor and a Rhodamine Acceptor. Y Zhang, S Xia, S Wan, TE Steenwinkel, T Vohs, RL Luck, T Werner, H Liu. ChemBioChem 22 (13), 2282-2291.
- Ratiometric Near-Infrared Fluorescent Probes Based on Hemicyanine Dyes Bearing Dithioacetal and Formal Residues for pH Detection in Mitochondria. Yibin Zhang, Shuai Xia, Shulin Wan, Tessa E Steenwinkel, Tara Vohs, Rudy L Luck, Thomas Werner, Haiying Liu. Molecules 26, 2088.
- A ratiometric near-infrared fluorescent probe based on a novel reactive cyanine platform for mitochondrial pH detection. Shulin Wan, Shuai Xia, Jerry Medford, Emma Durocher, Tessa E Steenwinkel, Lexi Rule, Yibin Zhang, Rudy L Luck, Thomas Werner, Haiying Liu. Journal of Materials Chemistry B 9 (25), 5150-5161.
- A near-infrared fluorescent probe based on a hemicyanine dye with an oxazolidine switch for mitochondrial pH detection. Wafa Mazi, Yunnan Yan, Yibin Zhang, Shuai Xia, Shulin Wan, Momoko Tajiri, Rudy L Luck, Haiying Liu. Journal of Materials Chemistry B 9 (3), 857-863.
- A new near-infrared ratiometric fluorescent probe based on quinoline-fused rhodamine dye for sensitive detection of cysteine and homocysteine in mitochondria. Yating Yu, Jianbo Wang, Huan Xiang, Linkun Ying, Chenyuan Wu, Hongwei Zhou, Haiying Liu. Dyes and Pigments 183, 108710.
- Highly sensitive determination of 4-nitrophenol with coumarin-based fluorescent molecularly imprinted poly (ionic liquid). Hao Dai, Ziyi Deng, Yanbo Zeng, Jian Zhang, Yiwen Yang, Qinyan Ma, Wenling Hu, Longhua Guo, Lei Li, Shulin Wan, Haiying Liu. Journal of Hazardous Materials 398, 122854.
- A FRET-based near-infrared ratiometric fluorescent probe for detection of mitochondria biothiol. Lu Wang, Jianbo Wang, Shuai Xia, Xinxin Wang, Yating Yu, Hongwei Zhou, Haiying Liu. Talanta 219, 121296.
- Cell membrane-specific fluorescent probe featuring dual and aggregation-induced emissions. Yibin Zhang, Yunnan Yan, Shuai Xia, Shulin Wan, Tessa E Steenwinkel, Jerry Medford, Emma Durocher, Rudy L Luck, Thomas Werner, Haiying Liu.
ACS applied materials & interfaces 12 (18), 20172-20179. - Ratiometric fluorescent probes based on through-bond energy transfer of cyanine donors to near-infrared hemicyanine acceptors for mitochondrial pH detection and monitoring of mitophagy. Shuai Xia, Jianbo Wang, Yibin Zhang, Nick Whisman, Jianheng Bi, Tessa E Steenwinkel, Shulin Wan, Jerry Medford, Momoko Tajiri, Rudy L Luck, Thomas Werner, Haiying Liu. Journal of Materials Chemistry B 8 (8), 1603-1615.
Rudy Lin Luck
Non-Refereed Publications:
- Chen, Z., Luck, R. Production of trimethylaluminum (Me3Al) with counterfeit refrigerant chloromethane (R-40), reactivity of Me3Al with refrigerant oils and methods to deactivate Me3Al.” Cogent Chemistry, 2018, 4, 1487258 (1-15 pages).
- Luck, Rudy L., Horton, Derek“2-(3,4,5-trihydroxyoxan-2-yl)hydrazine-1-carbothioamide hydrate” CCDC 1913252: Experimental Crystal Structure Determination, 2019, DOI:10.5517/ccdc.csd.cc226wt0 CSD Communication, 2019, CCDC1913252, 30/04/2019.
- Rudy L. Luck, Derek Horton, Olivier Marcq 6-(2-methyl-2-phenylhydrazinylidene)hexane-1,2,3,4,5-pentayl pentaacetate CCDC 1913865: Experimental Crystal Structure Determination, 2019, DOI:10.5517/ccdc.csd.cc227jlg
- Rudy L. Luck, Derek Horton, Olivier Marcq (2R,3R,4S,5S)-6,6-bis(ethylthio)hexane-1,2,3,4,5-pentayl pentaacetate CCDC 1913866: Experimental Crystal Structure Determination, 2019, DOI:10.5517/ccdc.csd.cc227jmh
- Rudy L. Luck, Derek Horton, Olivier Marcq (2R,3S,4S,5S)-6,6-bis(ethylthio)hexane-1,2,3,4,5-pentayl pentaacetate CCDC 1937255: Experimental Crystal Structure Determination, 2019, DOI: 10.5517/ccdc.csd.cc230w34
- Rudy L. Luck, Derek Horton, Olivier Marcq (2R,3S,4S,5S)-6,6-bis(ethylthio)hexane-1,2,3,4,5-pentaol CCDC 1937683: Experimental Crystal Structure Determination, 2019, DOI: 10.5517/ccdc.csd.cc2319xd
- Chen, Z.; Luck, R. L. Oxidation of olefins using atmospheric oxygen atoms initiated by tert-butylhydroperoxide or hydrogen peroxide with silver nanoparticles deposited on MCM-41 as catalysts. Green Chem. 2016, 18, 3354-3359.
- Maass, J. S.; Chen, Z.; Zeller, M.; Luck, R. L. Syntheses and characterization of the vanadium trimer (V3(μ3-O)O2)(μ2-O2P(CH2C6H5)2)6(4,4'-bipyridine) and the vanadium hexamer [(V3(μ3-O)O2)(μ2-O2P(CH2C6H5)2)6]2(μ2-N1,N2-di(pyridin-4-yl)oxalamide). J. Coord. Chem. 2016, 69, 2342-2352.
- Chen, T.-H.; Zhang, S.; Jaishi, M.; Adhikari, R.; Bi, J.; Fang, M.; Xia, S.; Zhang, Y.; Luck, R. L.; Pati, R.; Hsien-Ming, L.; Luo, F.-T.; Tiwari, A.; Liu, H. New Near-Infrared Fluorescent Probes with Single-Photon Anti-Stokes-Shift Fluorescence for Sensitive Determination of pH Variances in Lysosomes with a Double-Checked Capability. ACS Appl. Bio Mater. 2018, 1, 549-560.
- Maass, J. S.; Wilharm, R. K.; Luck, R. L.; Zeller, M. Photoluminescent properties of three lanthanide compounds of formulae LnCl3(diphenyl((5-phenyl-1H-pyrazol-3-yl)methyl)phosphine oxide)2, Ln = Sm, Eu and Tb: X-ray structural, emission and vibrational spectroscopies, DFT and thermogravimetric studies. Inorganic Chim. Acta 2018, 471, 481-492.
- Zhang, Y.; Bi, J.; Xia, S.; Mazi, W.; Wan, S.; Mikesell, L.; Luck, R. L.; Liu, H. A near-infrared fluorescent probe based on a FRET rhodamine donor linked to a cyanine acceptor for sensitive detection of intracellular pH alternations. Molecules 2018, 23, 2679/2671-2679/2615.
- Zhang, Y.; Xia, S.; Fang, M.; Mazi, W.; Zeng, Y.; Johnston, T.; Pap, A.; Luck, R. L.; Liu, H. New near-infrared rhodamine dyes with large Stokes shifts for sensitive sensing of intracellular pH changes and fluctuations. Chem. Commun. (Cambridge, U. K.) 2018, 54, 7625-7628.
- Fang, M.; Xia, S.; Bi, J.; Wigstrom, T. P.; Valenzano, L.; Wang, J.; Tanasova, M.; Luck, R. L.; Liu, H. Detecting Zn(II) ions in live cells with near-infrared fluorescent probes. Molecules 2019, 24, 1592.
- Wang, J.; Xia, S.; Bi, J.; Zhang, Y.; Fang, M.; Luck, R. L.; Zeng, Y.; Chen, T.-H.; Lee, H.-M.; Liu, H. Near-infrared fluorescent probes based on TBET and FRET rhodamine acceptors with different pKa values for sensitive ratiometric visualization of pH changes in live cells. J. Mater. Chem. B 2019, 7, 198-209.
- Xia, S.; Fang, M.; Wang, J.; Bi, J.; Mazi, W.; Zhang, Y.; Luck, R. L.; Liu, H. Near-infrared fluorescent probes with BODIPY donors and rhodamine and merocyanine acceptors for ratiometric determination of lysosomal pH variance. Sens. Actuators, B 2019, 294, 1-13.
- Xia, S.; Zhang, Y.; Fang, M.; Mikesell, L.; Steenwinkel, T. E.; Wan, S.; Phillips, T.; Luck, R. L.; Werner, T.; Liu, H. A FRET-Based Near-Infrared Fluorescent Probe for Ratiometric Detection of Cysteine in Mitochondria. ChemBioChem 2019, Ahead of Print
Lynn R. Mazzoleni
- Clegg, S.L., L.R. Mazzoleni, V. Samburova, N.F. Taylor, D.R. Collins, S.K. Schum, A.G. Hallar, Modelling the hygroscopic growth factors of aerosol material containing a large water-soluble organic fraction, collected at the Storm Peak Laboratory, Atmospheric Environment, 2019, In Press.
- Schum S.K., B. Zhang, K. Dzepina, D. Helmig, P. Fialho, C. Mazzoleni, and L.R. Mazzoleni, Molecular and Physical Characteristics of Aerosol at a Remote Free Troposphere Site: Implications for Atmospheric Aging, Atmospheric Chemistry and Physics, 18, 14017–14036, doi.org/10.5194/acp-18-14017-2018, 2018.
- Brege, M.A., M. Paglione, S. Gilardoni, S. Decesari, M.C. Facchini, and L.R. Mazzoleni, Molecular Insights on Aging and Aqueous Phase Processing from Ambient Biomass Burning Emissions-Influenced Po Valley Fog and Aerosol, Atmospheric Chemistry and Physics, 18, 13197-13214, doi.org/10.5194/acp-18-13197-2018, 2018.
- Sengupta, D., V. Samburova, C. Bhattarai, E. Kirillova, L. Mazzoleni, M. Iaukea-Lum, A. Watts, H. Moosmüller, A. Khlystov, Light Absorption by Polar and Non-Polar Aerosol Compounds from Laboratory Biomass Combustion, Atmospheric Chemistry and Physics, 18, 10849-10867, doi.org/10.5194/acp-18-10849-2018, 2018.
- Khaksari, M., L.R. Mazzoleni, C. Ruan, P. Song, N.D. Hershey, R.T. Kennedy, M.A. Burns, and A.R. Minerick. Detection and Quantification of Vitamins in Microliter Volumes of Biological Samples by LC-MS for Clinical Screening, AIChE Journal, 64(10), doi.org/10.1002/aic.16345, 2018.
- Varanasi, L., E. Coscarelli, M. Khaksari, L. Mazzoleni, and D. Minakata, Transformations of Dissolved Organic Matter Induced by UV Photolysis, Hydroxyl Radicals, Chlorine Radicals, and Sulfate Radicals in Aqueous-Phase UV-Based Advanced Oxidation Processes, Water Research, 135: 22-30, doi.org/10.1016/j.watres.2018.02.015, 2018.
- Schultz, M.G., S. Schröder, O. Lyapina, O. Cooper, I. Galbally, I. Petropavlovskikh, E. von Schneidemesser, H. Tanimoto, Y. Elshorbany, M. Naja, R.J. Seguel, U. Dauert, P. Eckhardt, S. Feigenspan, M. Fiebig, A.-G. Hjellbrekke Y.-D. Hong, P.C. Kjeld, H. Koide, G. Lear, D. Tarasick, M. Ueno, M. Wallasch, D. Baumgardner, M.-T. Chuang, R. Gillett, M. Lee, S. Molloy, R. Moolla, T. Wang, K. Sharps, J.A. Adame, G. Ancellet, F. Apadula, P. Artaxo, M.E. Barlasina, M. Bogucka, P. Bonasoni, L. Chang, A. Colomb, E. Cuevas, M. Cupeiro, A. Degorska, A. Ding, M. Fröhlich, M. Frolova, H. Gadhavi, F. Gheusi, S. Gilge, M.Y. Gonzalez, V. Gros, S.H. Hamad, D. Helmig, D. Henriques, O. Hermansen, R. Holla, J. Hueber, U. Im, D.A. Jaffe, N. Komala, D. Kubistin, K.-S. Lam, T. Laurila, H. Lee, I. Levy, C. Mazzoleni, L.R. Mazzoleni, A. McClure-Begley, M. Mohamad, M. Murovec, M. Navarro-Comas, F. Nicodim, D. Parrish, K.A. Read, N. Reid, L. Ries, P. Saxena, J.J. Schwab, Y. Scorgie, I. Senik, P. Simmonds, V. Sinha, A.I. Skorokhod, G. Spain, W. Spangl, R. Spoor, S.R. Springston, K. Steer, M. Steinbacher, E. Suharguniyawan, P. Torre, T. Trickl, L. Weili, R. Weller, X. Xu, L. Xue, M. Zhiqiang, Tropospheric Ozone Assessment Report: Database and Metrics Data of Global Surface Ozone Observations, Elementa: Science of the Anthropocene, 5:58, doi.org/10.1525/elementa.244, 2017.
- China, S., P.A. Alpert, B. Zhang, S. Schum, K. Dzepina, K. Wright, R.C. Owen, L.R., Mazzoleni, C. Mazzoleni, D.A. Knopf, Ice Cloud Formation Potential by Free Tropospheric Particles from Curriculum Vitae – Lynn R. Mazzoleni Long-Range Transport over the Northern Atlantic Ocean, J. Geophysical Research, https://onlinelibrary.wiley.com/doi/10.1002/2016JD025817/full, 2017.
- Zhang, B., R.C. Owen, J.A. Perlinger, D. Helmig, M. Val Martin, L. Kramer, L.R. Mazzoleni and C. Mazzoleni, Ten-Year Chemical Signatures Associated with Long Range Transport Observed in the Free Troposphere Over the Central North Atlantic, Elementa: Science of the Anthropocene, 5: 8, DOI: https://doi.org/10.1525/elementa.194, 2017.
- Taylor, N.F., D.R. Collins, D.H. Lowenthal, B. Zielinska, V. Samburova, N. Kumar, A.G. Hallar, L.R. Mazzoleni, I.B. McCubbin, Hygroscopic Growth of Water Soluble Organic Carbon Isolated from Atmospheric Aerosol Collected at U.S. National Parks and Storm Peak Laboratory, Atmospheric Chemistry and Physics, 17, 2555-2571, doi:10.5194/acp-17-2555-2017, 2017.
- Kundu, S., R. Fisseha, A.L. Putman, T.A. Rahn, and L.R. Mazzoleni, Molecular Formula Composition of β-Caryophyllene Ozonolysis SOA Formed in Humid and Dry Conditions, Atmospheric Environment, 154, 70–81, 2017.
- Khaksari, M., L.R. Mazzoleni, C. Ruan, R.T. Kennedy, A.R. Minerick, Determination of Water-Soluble and Fat-Soluble Vitamins in Tears and Blood Serum of Infants and Parents by Liquid Chromatography/Mass Spectrometry, Experimental Eye Research, 155, 54–63, 2017.
- Khaksari, M., L.R. Mazzoleni, C. Ruan, R.T. Kennedy, A.R. Minerick, Data Representing Two Separate LC-MS Methods for Detection and Quantification of Water-Soluble and Fat-Soluble Vitamins in Tears and Blood Serum, Data in Brief, 11, 316-330, ISSN 2352-3409, https://dx.doi.org/10.1016/j.dib.2017.02.033, 2017.
Kathryn A. Perrine
- de Alwis, C.; Wahr, K.; Perrine, K. A. Influence of Cations on Direct CO2 Capture and Mineral Film Formation: The Role of KCl and MgCl2 at the Air/Electrolyte/Iron Interface. J. Phys. Chem. A, 128, 20, 2024, 4052-4067.
- de Alwis, C.; Perrine, K. A. Dechlorination of CDCl3 on Fe(111): Implications for disinfection by-product degradation. Surface Science, (732) 2023 122271.
- de Alwis, C.; Trought, M.; Crumlin, E.; Nemsak, S.; Perrine, K. A. Probing the initial stages of iron surface corrosion: Effect of O2 and H2O on surface carbonation. Applied Surface Science, (612) 2023 155596; published online Nov. 2022.
- de Alwis, C.; Trought, M.; Lundeen, J.; Perrine, K. A. Effect of Cations on the Oxidation and Atmospheric Corrosion of Iron Interfaces to Minerals. J. Phys. Chem. A, 125, 36, 2021, 8047–8063.
- Trought, M. A.; Perrine, K. A. Investigating the Relationship between Adhesion Forces and Surface Functionalization using Atomic Force Microscopy. J. Chem. Educ. 98, 5, 2021, 1768–1775.
- de Alwis, C.; Perrine, K. A. In Situ PM-IRRAS at the Air/Electrolyte/Solid Interface Reveals Oxidation of Iron to Distinct Minerals. J. Phys. Chem. A., 124 33, 2020, 6735–6744.
- de Alwis, C.; Leftwich, T. R.; Perrine, K. A. New Approach to Simultaneous In Situ Measurements of the Air/Liquid/Solid Interface Using PM-IRRAS. Langmuir, 36, 13, 2020 3404–3414.
- Trought, M. A.; Wentworth, I.; Leftwich, T. R.; Perrine, K. A. Unraveling Surface Oxidation Mechanisms of Functionalization of Highly Oriented Pyrolytic Graphite. preprint on ChemRxiv 10.26434/chemrxiv.12907604.v1.
- Degaga, G.; Trought, M. A.; Nemsak, S.; Crumlin, E., Pandey, R.; Seel, M.; Perrine, K. A. Investigation of N2 Adsorption on Fe3O4(001) using Ambient Pressure Photoelectron Spectroscopy and Density Functional Theory. J. Chem. Phys. 152, 2020 054717.
- de Alwis, C.; Leftwich, T. R.; Mukherjee, P.; Denofre, A.; Perrine, K. A. Spontaneous Selective Deposition of Iron Oxide Nanoparticles on Graphite as model catalysts. Nanoscale Advances 1, 2019 4729-4744.
- Trought, M. A.; Wentworth, I.; de Alwis, C.; Leftwich, T. R.; Perrine, K. A. Influence of surface etching and oxidation on the morphological growth of Al2O3 by ALD. Surface Science, (690) 2019 121479.
- Perrine, K. A., Parry, K. M., Stern, A. C., Van Spyk, M. H. C., Makowski, M. J., Freites, J. A.; Winter, B., Tobias, D. J., Hemminger, J. C. Specific cation effects at aqueous solution-vapor interfaces: surfactant-like behavior of Li+ revealed by experiments and simulations. Proc. Natl. Acad. Sci. U.S.A. 114(51) 2017 13363–13368.
- Perrine, K. A.; Van Spyk, M. H. C.; Margarella, A. M.; Winter, B.; Faubel, M.; Bluhm H.; Hemminger, J. C. Characterization of the acetonitrile aqueous solution/vapor interface by liquid-jet X-ray photoelectron spectroscopy. J. Phys. Chem. C, 118(50) 2014 29378–29388.
- Margarella, A. M.; Perrine, K. A.; Lewis, T.; Faubel, M.; Winter, B.; Hemminger, J. C. Dissociation of sulfuric acid in aqueous solution: determination of the photoelectron spectral fingerprints of H2SO4, HSO4- and SO4- in water. J. Phys. Chem. C, 117(16) 2013 8131-8137.
- Perrine, K. A.; Lin, J.-M..; Teplyakov, A. V. Controlling the formation of metallic nanoparticles on functionalized silicon surfaces. J. Phys. Chem. C, 116(27) 2012 14431-14444.
- Perrine, K. A.; Teplyakov, A. V. Metallic nanostructure formation limited by the surface hydrogen on silicon. Langmuir, 26 (15) 2010 12648-12658.
- Perrine, K. A.; Teplyakov, A. V. Reactivity of Selectively Terminated Single Crystal Silicon Surfaces. Chem. Soc. Rev., 39(8) 2010 3256 – 3274.
Martin Thompson
- Thompson, M. (2009) Thermodynamic and kinetic analysis of bromodomain-histone interactions. Methods in Enzymology, Biothermodynamics, Part B, 466. In press.
- Thompson, M. (2009) Polybromo-1: the chromatin targeting subunit of the PBAF complex. Biochimie. 91, 309-319.
- Kupitz, C., Chandrasekaran, R., and Thompson, M. (2008) Kinetic analysis of acetylation- dependent Pb1 bromodomain-histone interactions. Biophys. Chem. 136, 7-12.
- Garzón, J.F.G., Kupitz, C., Bailey, J., and Thompson, M. (2008) Acetylation-dependent binding analysis of the yeast Gcn5 bromodomain protein. American Journal of Undergraduate Research 7, 19-26.
- Thompson, M., and Chandrasekaran, R. (2008) Thermodynamic analysis of acetylation- dependent Pb1 bromodomain-histone H3 interactions. Analytical Biochemistry 374, 304-312.
- Chandrasekaran, R., and Thompson, M. (2007) Polybromo-1-bromodomains bind histone H3 at specific acetyl-lysine positions. Biochemical and Biophysical Research Communications 355, 661-666.
- Thompson, M. (2007) Spectral Properties and DNA Targeting Features of a Thiazole Orange- Peptide Bioconjugate. Biomacromolecules 8, 3628 - 3633.
Ashutosh Tiwari
Tiwari lab students/postdocs; AT as corresponding/co-corresponding author*
- Adhikari R, Yang M, Saikia N, Dutta C, Alharbi WFA, Shan Z, Pandey R, and Tiwari A*. Acetylation of Aβ42 at Lysine 16 Disrupts Amyloid Formation. ACS Chem Neurosci.(2020)11(8):1178-1191. DOI: 10.1021/acschemneuro.0c00069. PMID: 32207962
- Mazi W, Adhikari R, Zhang Y, Xia S, Fang M, Luck RL, Tajiri M, Tiwari A*, Tanasova M, and Liu H.Fluorescent Probes with High pKa Values Based on Traditional, Near-infrared Rhodamine, and Hemicyanine Fluorophores for Sensitive Detection of Lysosomal pH Variations. Methods (2019) 168: 40-50. DOI: https://doi.org/10.1016/j.ymeth.2019.07.012
- Chen T-H, Zhang S, Jaishi M, Adhikari R, Bi J, Fang M, Xia S, Zhang Y, Luck RL, Pati R, Lee H-M, Luo F-T, Tiwari A*, and Liu H. New Near-Infrared Fluorescent Probes with Single-Photon Anti-Stokes-Shift Fluorescence for Sensitive Determination of pH Variances in Lysosomes with a Double-Checked Capability. ACS Appl. Bio Mater. (2018) 1(3): 549-560. DOI: 10.1021/acsabm.8b00020
- Zhang J, Li C, Dutta C, Fang M, Zhang S, Tiwari A*, Werner T, Luo F-T, Liu H. A novel near-infrared fluorescent probe for sensitive detection of β-galactosidase in living cells. Analytica Chimica Acta(2017) 968: 97-104.
- Zhang S, Adhikari R, Fang M, Dorh N, Li C, Jaishi M, Zhang J, Tiwari A*, Pati R, Luo F-T, and Liu H. Near-Infrared Fluorescent Probes with Large Stokes Shifts for Sensing Zn(II) Ions in Living Cells. ACS Sensors (2016) 1(12): 1408-1415. DOI: 10.1021/acssensors.6b00490. No PMID
- Dorh N, Zhu S, Dhungana KB, Pati R, Luo FT, Liu H, Tiwari A*. BODIPY-Based Fluorescent Probes for Sensing Protein Surface-Hydrophobicity. Sci Rep.(2015)5: 18337. DOI: 10.1038/srep18337. PMID: 26679512
- Dutta C, Yang M, Long F, Shahbazian-Yassar R, and Tiwari A*.Preformed Seeds Modulate Native Insulin Aggregation Kinetics. J. Phys. Chem. B (2015) 119(49): 15089-15099. DOI: 10.1021/acs.jpcb.5b07221. PMID: 26560632
- Yang M, Dutta C, and Tiwari A*. Disulfide-Bond Scrambling Promotes Amorphous Aggregates in Lysozyme and Bovine Serum Albumin. J. Phys. Chem. B (2015) 119(10): 3969-3981. DOI: 10.1021/acs.jpcb.5b00144. PMID: 25689578
- Vegesna G,Janjanam J, Bi J, Luo F-T, Zhang J, Olds C, Tiwari A*, and Liu H. pH-activatable near-infrared fluorescent probes for detection of lysosomal pH inside living cells. J Mater. Chem. B (2014)2(28): 4500-4508. DOI: 10.1039/c4tb00475b. No PMID
- Tiwari A*, Liba A, Sohn SH, Seetharaman SV, Bilsel O, Matthews CR, Hart PJ, Valentine JS, and Hayward LJ. Metal deficiency increases aberrant hydrophobicity of mutant superoxide dismutases that cause amyotrophic lateral sclerosis. J Biol Chem. (2009) 284(40): 27746–27758. DOI: 10.1074/jbc.M109.043729. PMID: 19651777
- Tiwari A and Bhat R. Stabilization of yeast hexokinase A by polyol osmolytes: Correlation with physicochemical properties of aqueous solutions. Biophys Chem. (2006)124(2): 90-99. DOI: 10.1016/j.bpc.2006.06.003. PMID: 16828962
- Low HP, Tiwari A, Janjanam J, Qiu L, Chang C-I, Strohsnitter WC, Norwitz ER, Tam SW, Evans JE, Green KM, Paulo JA, Lambe M, and Hsieh CC. Proteomic screen of umbilical cord blood plasma from pregnancies complicated by preeclampsia, an epidemiology-actuated model of decreased breast cancer susceptibility. Genomics Proteomics Bioinformatics(2013)11(6): 335-344. DOI: 10.1016/j.gpb.2013.09.009 PMID: 24296084
- Tiwari A, Xu Z,and Hayward LJ. Aberrantly increased hydrophobicity shared by mutants of Cu/Zn superoxide dismutase in familial amyotrophic lateral sclerosis. J Biol Chem. (2005)280(33): 29771-29779. DOI: 10.1074/jbc.M504039200. PMID: 15958382. (Featured in August 19, 2005 issue of the Journal of Biological Chemistry as 'Paper of the Week' (J Biol Chem. (2005) 280: e99939))
- Tiwari A and Hayward LJ. Familial ALS Mutants of Cu/Zn Superoxide Dismutase are Susceptible to Disulfide Reduction. J Biol Chem. (2003)278(8): 5984-5992. DOI: 10.1074/jbc.M210419200. PMID: 12458194
Loredana Valenzano-Slough
- J. Huang, L. Valenzano, T.V. Singh, R. Pandey, G.N. Sant, The Influence of (Mg, Al, Fe) Impurities on Triclinic Ca3SiO5: Interpretations from First Principles Calculations, Crystal Growth and Design, in press (2014)
- S. Chavan, F. Bonino, L. Valenzano, B. Civalleri, C. Lamberti, N. Acerbi, J. Cavka, M. Leistner, S. Bordiga, Fundamental Aspects of H2S Adsorption on CPO-27-Ni, J. Chem. Phys. C, 117, 15615-15622 (2013)
- D. Gianolio, J.G. Vitillo, B. Civalleri, S. Bordiga, U. Olsbye, K.P. Lillerud, L. Valenzano, C. Lamberti, Combined Study of Structural Properties on Metal-Organic Frameworks with Same Topology but Different Linkers or Metal, 15th International Conference on X-ray Absorption Fine Structure (XAFS15), Journal of Physics: Conference Series, 430, 012134 (2013)
- S. Zhu, J. Bi, G. Vegesna, J. Zhang, F.-T. Luo, L. Valenzano*, H. Liu, Functionalization of BODIPY Dyes at 2,6-Positions through Formyl Groups, RSC Advances, 3, 4793-4800 (2013)
- J. Zhang, S. Zhu, L. Valenzano, F.-T. Luo, H. Liu, BODIPY-based Ratiometric Fluorescent Probes for Sensitive and Selective Sensing of Cyanide Ion, RSC Advances 3, 68-74 (2013)
- A.J. Kennedy, L. Valenzano*, Computational Prediction of the Behavior of MOF-74 under Hydrated Conditions, Am. Chem. Soc., Div. Fuel Chem., 57 (1), 913-916 (2012)
- L. Valenzano*, W. J. Slough, W. F. Perger, Accurate Prediction of Second-Order Elastic Constants from First Principles: PETN and TATB, AIP Conf. Proc. 1426, 1191 (2012) Read More
- W. J. Slough, L. Valenzano, W. F. Perger, The terahertz infrared spectrum of cyclotrimethylenetrinitramine: targeting anharmonic modes for the fingerprinting and detection of RDX, AIP Conf. Proc. 1426, 1219 (2012) Read More
- J. Criswell, W. F. Perger, K. M. Flurchick, L. Valenzano, W. J. Slough, The effect of a simulated volumetric expansion: Calculated vibrational properties and elastic constants of pentaerythritol, AIP Conf. Proc. 1426, 1179 (2012) Read More
- K. M. Flurchick, W. F. Perger, W. J. Slough, L. Valenzano, Gamma phase RDX: Initial study of geometry, spectrum and EOS, AIP Conf. Proc. 1426, 567 (2012) Read More
- W. F. Perger, W. J. Slough, L. Valenzano, K. M. Flurchick, Calculation of the vibrational spectra of α-rdx using the Grimme DFT potential, AIP Conf. Proc. 1426, 571 (2012) Read More
- L. Valenzano, J. G. Vitillo, S. Chavan, B. Civalleri, F. Bonino, S. Bordiga, C. Lamberti, Structure-activity relationships of simple molecules adsorbed on CPO-27-Ni Metal-Organic Framework: in situ experiments vs. theory, Catal. Today 182, 67 (2012) Read More
- J. C. Tan, B. Civalleri, C.-C. Lin, L. Valenzano, R. Galvelis, P.-F. Chen, T.-D. Bennet, C. Mellot-Draznieks, C. M. Zicovich-Wilson, A. K. Cheetham, Elasticity of Sodalite ZIF-8: a Porous Metal-Organic Framework Material with an Exceptionally Low Shear Modulus, Phys. Rev. Lett. 108, 095502, (2012) Read More
- S. Chavan, J. G. Vitillo, D. Gianoglio, O. Zavorotynska, B. Civalleri, S. Jakobsen, M.H. Nilsen, L. Valenzano, C. Lamberti, K. P. Lillerud, S. Bordiga, H2 storage in isostructural UiO-67 and UiO-66 MOFs, Phys. Chem. Chem. Phys. 14, 1614 (2012) Read More
- L. Valenzano, B. Civalleri, K. Sillar, J. Sauer, Heat of adsorption of CO and CO2 in metal organic frameworks: Quantum mechanical study of CPO-27-M (M = Mg, Ni, Zn), J. Phys. Chem. C 115, 21777 (2011) Read More
- L. Valenzano, B. Civalleri, S. Chavan, S. Bordiga, M. Nilsen, S. Jakobsen, K.P. Lillerud, C. Lamberti, Disclosing the complex structure of UiO-66: a synergic combination of experiment and theory, Chem. Mater. 23, 1700 (2011) Read More
- F. Bardelli, M. Benvenuti, P. Costagliola, F. Di Benedetto, P. Lattanzi, C. Meneghini, M. Romanelli, L. Valenzano, Arsenic uptake by natural calcite: an XAS study, Geo. Cosmo. Acta, 75, 3011 (2011) Read More
- L. Valenzano, B. Civalleri, S. Chavan, G.T. Palomino, C.O. Arean, S. Bordiga, Computational and experimental studies on the adsorption of CO, N2 and CO2 on Mg-MOF-74, J. Phys. Chem. C, 114, 11185 (2010) Read More